Bifidobacterium choerinum strain FMB-1

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium choerinum strain FMB-1 is a rod-shaped bacterium primarily found in the rumen fluid of Bos taurus, commonly known as cattle. This strain is notable for its possession of true flagella, which may contribute to its motility within the ruminal environment. Bifidobacterium choerinum FMB-1 has two replicons, indicating a complex genomic structure that may play a role in its adaptability and functionality in the rumen. The presence of this bacterium in the rumen highlights its potential importance in the digestive processes of ruminants. The rumen serves as a fermentation chamber, where a diverse microbial community aids in the breakdown of complex carbohydrates and the production of volatile fatty acids, which are critical for the energy needs of the host animal. The role of Bifidobacterium choerinum FMB-1 in this ecosystem suggests it may contribute to the overall health and efficiency of nutrient absorption in cattle. The strain is cataloged under the accessions NZ_CP018044.1 and NZ_CP018045.1, which provide a basis for further genomic and functional studies. Understanding the specific roles and interactions of Bifidobacterium choerinum FMB-1 within the rumen microbiome could offer insights into improving livestock health and productivity, as well as enhancing the sustainability of ruminant farming systems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium choerinum
Strainstrain FMB-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen fluid
Biotic relationshipNot Available
Host(s)Bos taurus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium choerinum strain FMB-1 chromosome, complete

Gene Summary

Adenine Count

386891 bp

Thymine Count

386420 bp

Guanine Count

738911 bp

Cytosine Count

734060 bp

Genome Length

2246282 bp

Protein-coding Genes

1767 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha/beta hydrolaseBcFMB_RS06930Not AvailableNegative1715807 - 171688938035.0
50s ribosomal protein l25/general stress protein ctcBcFMB_RS06940Not AvailablePositive1717169 - 171778922660.0
branched-chain amino acid aminotransferaseBcFMB_RS06945Not AvailablePositive1718017 - 171914441489.3
trimeric intracellular cation channel family proteinBcFMB_RS06950Not AvailablePositive1719346 - 172017029626.5
30s ribosomal protein s20BcFMB_RS06955Not AvailableNegative1720294 - 17205549216.28
translation elongation factor 4BcFMB_RS06960Not AvailablePositive1720703 - 172258369032.9
radical sam family heme chaperone hemwBcFMB_RS06965Not AvailablePositive1722595 - 172377342993.4
glutamate synthase large subunitBcFMB_RS06970Not AvailablePositive1724074 - 1728594165075.0
glutamate synthase subunit betaBcFMB_RS06975Not AvailablePositive1728596 - 173013156260.6
hypothetical proteinBcFMB_RS06980Not AvailablePositive1730343 - 173080117097.4

Displaying genes 1461 – 1470 of 1897 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.