Bifidobacterium choerinum strain FMB-1

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium choerinum strain FMB-1 is a rod-shaped bacterium primarily found in the rumen fluid of Bos taurus, commonly known as cattle. This strain is notable for its possession of true flagella, which may contribute to its motility within the ruminal environment. Bifidobacterium choerinum FMB-1 has two replicons, indicating a complex genomic structure that may play a role in its adaptability and functionality in the rumen. The presence of this bacterium in the rumen highlights its potential importance in the digestive processes of ruminants. The rumen serves as a fermentation chamber, where a diverse microbial community aids in the breakdown of complex carbohydrates and the production of volatile fatty acids, which are critical for the energy needs of the host animal. The role of Bifidobacterium choerinum FMB-1 in this ecosystem suggests it may contribute to the overall health and efficiency of nutrient absorption in cattle. The strain is cataloged under the accessions NZ_CP018044.1 and NZ_CP018045.1, which provide a basis for further genomic and functional studies. Understanding the specific roles and interactions of Bifidobacterium choerinum FMB-1 within the rumen microbiome could offer insights into improving livestock health and productivity, as well as enhancing the sustainability of ruminant farming systems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium choerinum
Strainstrain FMB-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen fluid
Biotic relationshipNot Available
Host(s)Bos taurus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium choerinum strain FMB-1 chromosome, complete

Gene Summary

Adenine Count

386891 bp

Thymine Count

386420 bp

Guanine Count

738911 bp

Cytosine Count

734060 bp

Genome Length

2246282 bp

Protein-coding Genes

1767 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
single-stranded dna-binding proteinBcFMB_RS06480Not AvailablePositive1607406 - 160785516339.3
type iv secretory system conjugative dna transfer family proteinBcFMB_RS06485Not AvailablePositive1607858 - 160962163785.7
duf4913 domain-containing proteinBcFMB_RS06490Not AvailablePositive1609618 - 161061936157.7
hypothetical proteinBcFMB_RS06495Not AvailablePositive1610616 - 161170440140.1
hypothetical proteinBcFMB_RS06500Not AvailablePositive1611722 - 161213514926.5
hypothetical proteinBcFMB_RS06505Not AvailablePositive1612158 - 161384663474.5
nucleotidyl transferase abieii/abigii toxin family proteinBcFMB_RS06510Not AvailableNegative1613876 - 161481435408.8
type iv toxin-antitoxin system abiei family antitoxinBcFMB_RS06515Not AvailableNegative1614801 - 161535220556.8
hypothetical proteinBcFMB_RS06520Not AvailablePositive1615413 - 161583815540.2
dna adenine methylaseBcFMB_RS06525Not AvailablePositive1616000 - 161688732749.1

Displaying genes 1371 – 1380 of 1897 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.