Pseudomonas frederiksbergensis strain ERDD5:01

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas frederiksbergensis strain ERDD5:01 is characterized by having two replicons, which may indicate a complex genomic architecture. This strain is cataloged under two specific accessions: NZ_CP017887.1 and NZ_CP017886.1, which provide a basis for further genomic and functional studies. The presence of two replicons in this strain may suggest a potential for enhanced adaptability and metabolic versatility, traits commonly associated with Pseudomonas species. This genus is known for its ability to thrive in diverse environments and to degrade various organic compounds, making it an important player in biogeochemical cycles. The ecological insights drawn from the attributes of Pseudomonas frederiksbergensis strain ERDD5:01 highlight the potential role of this strain in environmental processes, particularly in soil and aquatic ecosystems where it may contribute to nutrient cycling and the degradation of pollutants. Understanding its genetic makeup through the provided accessions could facilitate further research into its ecological functions and applications in bioremediation or agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas frederiksbergensis
Strainstrain ERDD5:01

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas frederiksbergensis strain ERDD5:01
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1,

Gene Summary

Adenine Count

85590 bp

Thymine Count

81485 bp

Guanine Count

98580 bp

Cytosine Count

105414 bp

Genome Length

371069 bp

Protein-coding Genes

351 genes

Non-Coding Genes

11 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-metNot AvailableNot AvailablePositive3809331 - 3809407Not Available
methyl-accepting chemotaxis proteinBLL42_RS18285Not AvailableNegative3809524 - 381158172920.6
mfs transporterBLL42_RS18290Not AvailablePositive3811914 - 381313143067.6
redox-regulated atpase ychfBLL42_RS18295Not AvailableNegative3813279 - 381437940033.1
aminoacyl-trna hydrolaseBLL42_RS18300Not AvailableNegative3814403 - 381498720980.3
50s ribosomal protein l25/general stress protein ctcBLL42_RS18305Not AvailableNegative3815158 - 381574820846.2
ribose-phosphate pyrophosphokinaseBLL42_RS18310Not AvailableNegative3815891 - 381683234146.3
Trna-glnNot AvailableNot AvailablePositive3816879 - 3816953Not Available
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseBLL42_RS18320Not AvailableNegative3816991 - 381784230550.8
lipoprotein insertase outer membrane protein lolbBLL42_RS18325Not AvailableNegative3817844 - 381846123138.6

Displaying genes 4171 – 4180 of 5860 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.