Pseudomonas frederiksbergensis strain ERDD5:01

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas frederiksbergensis strain ERDD5:01 is characterized by having two replicons, which may indicate a complex genomic architecture. This strain is cataloged under two specific accessions: NZ_CP017887.1 and NZ_CP017886.1, which provide a basis for further genomic and functional studies. The presence of two replicons in this strain may suggest a potential for enhanced adaptability and metabolic versatility, traits commonly associated with Pseudomonas species. This genus is known for its ability to thrive in diverse environments and to degrade various organic compounds, making it an important player in biogeochemical cycles. The ecological insights drawn from the attributes of Pseudomonas frederiksbergensis strain ERDD5:01 highlight the potential role of this strain in environmental processes, particularly in soil and aquatic ecosystems where it may contribute to nutrient cycling and the degradation of pollutants. Understanding its genetic makeup through the provided accessions could facilitate further research into its ecological functions and applications in bioremediation or agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas frederiksbergensis
Strainstrain ERDD5:01

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas frederiksbergensis strain ERDD5:01
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1,

Gene Summary

Adenine Count

85590 bp

Thymine Count

81485 bp

Guanine Count

98580 bp

Cytosine Count

105414 bp

Genome Length

371069 bp

Protein-coding Genes

351 genes

Non-Coding Genes

11 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenaseBLL42_RS13950Not AvailableNegative2894268 - 289508929343.0
oxygen-dependent coproporphyrinogen oxidaseBLL42_RS13955Not AvailableNegative2895103 - 289601734471.3
nadph:quinone reductaseBLL42_RS13960Not AvailablePositive2896197 - 289717434381.3
l-threonylcarbamoyladenylate synthaseBLL42_RS13965Not AvailableNegative2897217 - 289777420722.0
dna-processing protein dpraBLL42_RS13970Not AvailableNegative2897842 - 289894538821.8
lysm peptidoglycan-binding domain-containing proteinBLL42_RS13975Not AvailableNegative2899026 - 290005137454.1
peptide deformylaseBLL42_RS13980Not AvailablePositive2900222 - 290072819325.3
methionyl-trna formyltransferaseBLL42_RS13985Not AvailablePositive2900795 - 290175433809.9
16s rrna (cytosine(967)-c(5))-methyltransferase rsmbBLL42_RS13990Not AvailablePositive2901751 - 290306147427.2
trk system potassium transporter trkaBLL42_RS13995Not AvailablePositive2903089 - 290446249764.0

Displaying genes 3301 – 3310 of 5860 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.