Pseudomonas frederiksbergensis strain ERDD5:01

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas frederiksbergensis strain ERDD5:01 is characterized by having two replicons, which may indicate a complex genomic architecture. This strain is cataloged under two specific accessions: NZ_CP017887.1 and NZ_CP017886.1, which provide a basis for further genomic and functional studies. The presence of two replicons in this strain may suggest a potential for enhanced adaptability and metabolic versatility, traits commonly associated with Pseudomonas species. This genus is known for its ability to thrive in diverse environments and to degrade various organic compounds, making it an important player in biogeochemical cycles. The ecological insights drawn from the attributes of Pseudomonas frederiksbergensis strain ERDD5:01 highlight the potential role of this strain in environmental processes, particularly in soil and aquatic ecosystems where it may contribute to nutrient cycling and the degradation of pollutants. Understanding its genetic makeup through the provided accessions could facilitate further research into its ecological functions and applications in bioremediation or agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas frederiksbergensis
Strainstrain ERDD5:01

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas frederiksbergensis strain ERDD5:01
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1,

Gene Summary

Adenine Count

85590 bp

Thymine Count

81485 bp

Guanine Count

98580 bp

Cytosine Count

105414 bp

Genome Length

371069 bp

Protein-coding Genes

351 genes

Non-Coding Genes

11 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glucose-1-phosphate thymidylyltransferase rfbaBLL42_RS12795Not AvailablePositive2638956 - 263983132475.9
dtdp-4-dehydrorhamnose 3,5-epimeraseBLL42_RS12800Not AvailablePositive2639828 - 264037620671.3
dtdp-4-dehydrorhamnose reductaseBLL42_RS12805Not AvailablePositive2640373 - 264125432406.6
atp-binding proteinBLL42_RS12810Not AvailablePositive2641291 - 264309967050.0
sigma-54-dependent transcriptional regulatorBLL42_RS12815Not AvailablePositive2643096 - 264449650919.1
thioesterase domain-containing proteinBLL42_RS12820Not AvailablePositive2644547 - 264500217127.7
3'(2'),5'-bisphosphate nucleotidase cysqBLL42_RS12825Not AvailableNegative2645067 - 264590329503.2
adp compounds hydrolase nudeBLL42_RS12830Not AvailableNegative2645900 - 264646620819.9
gmp/imp nucleotidaseBLL42_RS12835Not AvailablePositive2646555 - 264721725431.4
lysr family transcriptional regulatorBLL42_RS12840Not AvailablePositive2647331 - 264821832881.7

Displaying genes 3071 – 3080 of 5860 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.