Pseudomonas frederiksbergensis strain ERDD5:01

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas frederiksbergensis strain ERDD5:01 is characterized by having two replicons, which may indicate a complex genomic architecture. This strain is cataloged under two specific accessions: NZ_CP017887.1 and NZ_CP017886.1, which provide a basis for further genomic and functional studies. The presence of two replicons in this strain may suggest a potential for enhanced adaptability and metabolic versatility, traits commonly associated with Pseudomonas species. This genus is known for its ability to thrive in diverse environments and to degrade various organic compounds, making it an important player in biogeochemical cycles. The ecological insights drawn from the attributes of Pseudomonas frederiksbergensis strain ERDD5:01 highlight the potential role of this strain in environmental processes, particularly in soil and aquatic ecosystems where it may contribute to nutrient cycling and the degradation of pollutants. Understanding its genetic makeup through the provided accessions could facilitate further research into its ecological functions and applications in bioremediation or agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas frederiksbergensis
Strainstrain ERDD5:01

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas frederiksbergensis strain ERDD5:01
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1,

Gene Summary

Adenine Count

85590 bp

Thymine Count

81485 bp

Guanine Count

98580 bp

Cytosine Count

105414 bp

Genome Length

371069 bp

Protein-coding Genes

351 genes

Non-Coding Genes

11 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
urea abc transporter atp-binding protein urtdBLL42_RS10575Not AvailablePositive2158545 - 215941431448.9
urea abc transporter atp-binding subunit urteBLL42_RS10580Not AvailablePositive2159558 - 216025625530.3
urease accessory protein uredBLL42_RS10585Not AvailablePositive2160311 - 216113830260.4
urease subunit gammaBLL42_RS10590Not AvailablePositive2161275 - 216157711066.6
gnat family n-acetyltransferaseBLL42_RS10595Not AvailablePositive2161587 - 216212019834.5
gnat family n-acetyltransferaseBLL42_RS10600Not AvailablePositive2162127 - 216266019736.4
urease subunit betaBLL42_RS10605Not AvailablePositive2162657 - 216296511330.5
urease subunit alphaBLL42_RS10610Not AvailablePositive2163115 - 216481560556.6
nel-type e3 ubiquitin ligase domain-containing proteinBLL42_RS10615Not AvailableNegative2164876 - 2170065194312.0
nel-type e3 ubiquitin ligase domain-containing proteinBLL42_RS30860Not AvailableNegative2170218 - 2173802131942.0

Displaying genes 2691 – 2700 of 5860 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.