Pseudomonas frederiksbergensis strain ERDD5:01

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas frederiksbergensis strain ERDD5:01 is characterized by having two replicons, which may indicate a complex genomic architecture. This strain is cataloged under two specific accessions: NZ_CP017887.1 and NZ_CP017886.1, which provide a basis for further genomic and functional studies. The presence of two replicons in this strain may suggest a potential for enhanced adaptability and metabolic versatility, traits commonly associated with Pseudomonas species. This genus is known for its ability to thrive in diverse environments and to degrade various organic compounds, making it an important player in biogeochemical cycles. The ecological insights drawn from the attributes of Pseudomonas frederiksbergensis strain ERDD5:01 highlight the potential role of this strain in environmental processes, particularly in soil and aquatic ecosystems where it may contribute to nutrient cycling and the degradation of pollutants. Understanding its genetic makeup through the provided accessions could facilitate further research into its ecological functions and applications in bioremediation or agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas frederiksbergensis
Strainstrain ERDD5:01

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas frederiksbergensis strain ERDD5:01
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1,

Gene Summary

Adenine Count

85590 bp

Thymine Count

81485 bp

Guanine Count

98580 bp

Cytosine Count

105414 bp

Genome Length

371069 bp

Protein-coding Genes

351 genes

Non-Coding Genes

11 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cupin domain-containing proteinBLL42_RS10085Not AvailablePositive2042235 - 204257913108.8
3-hydroxyisobutyrate dehydrogenaseBLL42_RS10090Not AvailableNegative2042718 - 204360530239.7
coa-acylating methylmalonate-semialdehyde dehydrogenaseBLL42_RS10095Not AvailableNegative2043616 - 204513954044.3
lysr family transcriptional regulatorBLL42_RS10100Not AvailablePositive2045305 - 204625235323.7
ompa family proteinBLL42_RS10105Not AvailableNegative2046249 - 204670115914.0
diguanylate cyclase domain-containing proteinBLL42_RS10110Not AvailableNegative2046758 - 204802645841.1
yfir family proteinBLL42_RS10115Not AvailableNegative2048023 - 204859820773.2
exodeoxyribonuclease v subunit alphaBLL42_RS10120Not AvailableNegative2048761 - 205084876564.8
exodeoxyribonuclease v subunit betaBLL42_RS10125Not AvailableNegative2050845 - 2054534138095.0
exodeoxyribonuclease v subunit gammaBLL42_RS10130Not AvailableNegative2054531 - 2057983129758.0

Displaying genes 2591 – 2600 of 5860 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.