Rhodobacter xanthinilyticus strain LPB0142

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Genus

Rhodobacter

Description

Rhodobacter xanthinilyticus strain LPB0142 is a rod-shaped bacterium characterized by the presence of flagella, which likely facilitates motility in various environments. This strain has a unique genomic structure, possessing two replicons, indicating a complex genetic organization that may contribute to its adaptability and functional versatility. The strain is cataloged under two accession numbers, NZ_CP017781.1 and NZ_CP017783.1, which provide access to its genomic data for further investigation by researchers. The presence of two replicons suggests that R. xanthinilyticus LPB0142 may possess distinct genomic elements that could influence its metabolic pathways and ecological interactions. Biologically, Rhodobacter xanthinilyticus species are known for their role in phototrophic processes, which are essential in various ecosystems. The ability of this strain to utilize light for energy could enhance its ecological role in environments such as aquatic systems, where it may contribute to nutrient cycling and primary production. The combination of its motility and genomic features positions R. xanthinilyticus LPB0142 as a potentially significant player in biogeochemical processes, emphasizing the importance of studying its traits for understanding microbial ecology.

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodobacter xanthinilyticus strain LPB0142 chromosome, complete

Gene Summary

Adenine Count

569658 bp

Thymine Count

560892 bp

Guanine Count

1145958 bp

Cytosine Count

1186418 bp

Genome Length

3462926 bp

Protein-coding Genes

3294 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heparinase ii/iii family proteinLPB142_RS02000Not AvailableNegative406613 - 40836161767.9
rsmb/nop family class i sam-dependent rna methyltransferaseLPB142_RS02005Not AvailableNegative408433 - 40970443697.9
duf1674 domain-containing proteinLPB142_RS02010Not AvailablePositive409779 - 4099586505.66
4-hydroxy-tetrahydrodipicolinate reductaseLPB142_RS02015Not AvailableNegative410019 - 41082827957.7
30s ribosome-binding factor rbfaLPB142_RS02020Not AvailablePositive410925 - 41135616208.3
trna pseudouridine(55) synthase trubLPB142_RS02025Not AvailablePositive411382 - 41228131992.4
duf1643 domain-containing proteinLPB142_RS02030Not AvailablePositive412289 - 41280718893.5
calcium-binding proteinLPB142_RS02035Not AvailablePositive412913 - 41403737456.3
30s ribosomal protein s15LPB142_RS02040Not AvailablePositive414186 - 41445510390.7
ynfa family proteinLPB142_RS02045Not AvailablePositive414559 - 41488511445.2

Displaying genes 521 – 530 of 3449 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.