Rhodobacter xanthinilyticus strain LPB0142

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Genus

Rhodobacter

Description

Rhodobacter xanthinilyticus strain LPB0142 is a rod-shaped bacterium characterized by the presence of flagella, which likely facilitates motility in various environments. This strain has a unique genomic structure, possessing two replicons, indicating a complex genetic organization that may contribute to its adaptability and functional versatility. The strain is cataloged under two accession numbers, NZ_CP017781.1 and NZ_CP017783.1, which provide access to its genomic data for further investigation by researchers. The presence of two replicons suggests that R. xanthinilyticus LPB0142 may possess distinct genomic elements that could influence its metabolic pathways and ecological interactions. Biologically, Rhodobacter xanthinilyticus species are known for their role in phototrophic processes, which are essential in various ecosystems. The ability of this strain to utilize light for energy could enhance its ecological role in environments such as aquatic systems, where it may contribute to nutrient cycling and primary production. The combination of its motility and genomic features positions R. xanthinilyticus LPB0142 as a potentially significant player in biogeochemical processes, emphasizing the importance of studying its traits for understanding microbial ecology.

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodobacter xanthinilyticus strain LPB0142 chromosome, complete

Gene Summary

Adenine Count

569658 bp

Thymine Count

560892 bp

Guanine Count

1145958 bp

Cytosine Count

1186418 bp

Genome Length

3462926 bp

Protein-coding Genes

3294 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeLPB142_RS01100Not AvailableNegative214165 - 21544844918.9
transcription termination factor rhoLPB142_RS01105Not AvailableNegative215464 - 21673547265.8
copd family proteinLPB142_RS01110Not AvailableNegative216873 - 21733718099.8
maf family proteinLPB142_RS01115Not AvailablePositive217737 - 21833621938.6
shikimate dehydrogenaseLPB142_RS01120Not AvailablePositive218333 - 21917229660.0
dephospho-coa kinaseLPB142_RS01125Not AvailablePositive219169 - 21976521024.5
dna polymerase iii subunit epsilonLPB142_RS01130Not AvailablePositive219758 - 22044725480.5
quinolinate synthase nadaLPB142_RS01135Not AvailablePositive220555 - 22160738118.1
l-aspartate oxidaseLPB142_RS01140Not AvailablePositive221604 - 22315753546.2
carboxylating nicotinate-nucleotide diphosphorylaseLPB142_RS01145Not AvailablePositive223154 - 22399629202.7

Displaying genes 341 – 350 of 3449 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.