Rhodobacter xanthinilyticus strain LPB0142

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Genus

Rhodobacter

Description

Rhodobacter xanthinilyticus strain LPB0142 is a rod-shaped bacterium characterized by the presence of flagella, which likely facilitates motility in various environments. This strain has a unique genomic structure, possessing two replicons, indicating a complex genetic organization that may contribute to its adaptability and functional versatility. The strain is cataloged under two accession numbers, NZ_CP017781.1 and NZ_CP017783.1, which provide access to its genomic data for further investigation by researchers. The presence of two replicons suggests that R. xanthinilyticus LPB0142 may possess distinct genomic elements that could influence its metabolic pathways and ecological interactions. Biologically, Rhodobacter xanthinilyticus species are known for their role in phototrophic processes, which are essential in various ecosystems. The ability of this strain to utilize light for energy could enhance its ecological role in environments such as aquatic systems, where it may contribute to nutrient cycling and primary production. The combination of its motility and genomic features positions R. xanthinilyticus LPB0142 as a potentially significant player in biogeochemical processes, emphasizing the importance of studying its traits for understanding microbial ecology.

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodobacter xanthinilyticus strain LPB0142 chromosome, complete

Gene Summary

Adenine Count

569658 bp

Thymine Count

560892 bp

Guanine Count

1145958 bp

Cytosine Count

1186418 bp

Genome Length

3462926 bp

Protein-coding Genes

3294 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nickel-dependent hydrogenase large subunitLPB142_RS07615Not AvailablePositive1546672 - 154846566311.7
ni/fe-hydrogenase, b-type cytochrome subunitLPB142_RS07620Not AvailablePositive1548529 - 154930529823.5
hyad/hybd family hydrogenase maturation endopeptidaseLPB142_RS07625Not AvailablePositive1549586 - 155023622965.6
hypc/hybg/hupf family hydrogenase formation chaperoneLPB142_RS07630Not AvailablePositive1550236 - 155055610987.2
hydrogenase accessory proteinLPB142_RS07635Not AvailablePositive1550553 - 155097215464.6
hydrogenase expression/formation proteinLPB142_RS07640Not AvailablePositive1550976 - 155180328977.7
[nife]-hydrogenase assembly chaperone hybeLPB142_RS07645Not AvailablePositive1551800 - 155263630048.5
hypothetical proteinLPB142_RS07650Not AvailablePositive1552633 - 155351430017.5
hydrogenase maturation nickel metallochaperone hypaLPB142_RS07655Not AvailablePositive1553507 - 155384812175.8
hydrogenase nickel incorporation protein hypbLPB142_RS07660Not AvailablePositive1553848 - 155475031353.6

Displaying genes 1631 – 1640 of 3449 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.