Bradyrhizobium japonicum strain J5

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium japonicum strain J5 is a Gram-negative, rod-shaped bacterium that primarily inhabits soybean fields. This strain possesses a single replicon and is characterized by the presence of flagella, which facilitates its motility in soil and rhizosphere environments. B. japonicum strain J5 is known for its symbiotic relationship with various host plants, notably Glycine max (soybean). Beyond soybeans, it can also associate with other plant species, including Aeschynomene, Neptunia, and Sesbania. Additionally, it has been observed to interact with several green algae, such as Chlamydomonas reinhardtii, Chlorella vulgaris, and Scenedesmus sp., as well as Botryococcus braunii and members of the Chlorophyta group. The ability of B. japonicum strain J5 to form symbiotic relationships with both plants and algae highlights its ecological versatility and potential role in nutrient cycling within agricultural systems. By fixing atmospheric nitrogen, this strain contributes to soil fertility, which is particularly beneficial in soybean cultivation. The presence of such microorganisms in soil ecosystems underscores their importance in sustainable agriculture and their potential to enhance crop yields while minimizing chemical fertilizer use. The accession number for B. japonicum strain J5 is NZ_CP017637.1, which can be referenced for further genomic insights.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium japonicum
Strainstrain J5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bradyrhizobium japonicum strain J5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoybean fields
Biotic relationshipNot Available
Host(s)Homo sapiens, Chlamydomonas reinhardtii, Chlorella vulgaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium japonicum strain J5 chromosome, complete genome.

Gene Summary

Adenine Count

1860975 bp

Thymine Count

1858608 bp

Guanine Count

3204448 bp

Cytosine Count

3214620 bp

Genome Length

10138651 bp

Protein-coding Genes

9480 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
general secretion pathway protein gspkBKD09_RS34610Not AvailableNegative7230798 - 723174533874.6
type ii secretion system protein jBKD09_RS34615Not AvailableNegative7231742 - 723242524864.8
prepilin-type n-terminal cleavage/methylation domain-containing proteinBKD09_RS34620Not AvailableNegative7232425 - 723282914533.9
prepilin-type n-terminal cleavage/methylation domain-containing proteinBKD09_RS34625Not AvailableNegative7232807 - 723328016725.3
type ii secretion system major pseudopilin gspgBKD09_RS34630Not AvailableNegative7233258 - 723372816899.3
type ii secretion system f family proteinBKD09_RS34635Not AvailableNegative7233745 - 723496243251.4
gspe/pule family proteinBKD09_RS34640Not AvailableNegative7234967 - 723665260563.2
type ii secretion system secretin gspdBKD09_RS34650Not AvailablePositive7237049 - 723932278881.8
tetratricopeptide repeat proteinBKD09_RS34655Not AvailablePositive7239354 - 723985117759.0
transglutaminase-like cysteine peptidaseBKD09_RS34660Not AvailablePositive7240054 - 724070123789.4

Displaying genes 6931 – 6940 of 9556 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.