Bradyrhizobium japonicum strain J5

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium japonicum strain J5 is a Gram-negative, rod-shaped bacterium that primarily inhabits soybean fields. This strain possesses a single replicon and is characterized by the presence of flagella, which facilitates its motility in soil and rhizosphere environments. B. japonicum strain J5 is known for its symbiotic relationship with various host plants, notably Glycine max (soybean). Beyond soybeans, it can also associate with other plant species, including Aeschynomene, Neptunia, and Sesbania. Additionally, it has been observed to interact with several green algae, such as Chlamydomonas reinhardtii, Chlorella vulgaris, and Scenedesmus sp., as well as Botryococcus braunii and members of the Chlorophyta group. The ability of B. japonicum strain J5 to form symbiotic relationships with both plants and algae highlights its ecological versatility and potential role in nutrient cycling within agricultural systems. By fixing atmospheric nitrogen, this strain contributes to soil fertility, which is particularly beneficial in soybean cultivation. The presence of such microorganisms in soil ecosystems underscores their importance in sustainable agriculture and their potential to enhance crop yields while minimizing chemical fertilizer use. The accession number for B. japonicum strain J5 is NZ_CP017637.1, which can be referenced for further genomic insights.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium japonicum
Strainstrain J5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bradyrhizobium japonicum strain J5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoybean fields
Biotic relationshipNot Available
Host(s)Homo sapiens, Chlamydomonas reinhardtii, Chlorella vulgaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium japonicum strain J5 chromosome, complete genome.

Gene Summary

Adenine Count

1860975 bp

Thymine Count

1858608 bp

Guanine Count

3204448 bp

Cytosine Count

3214620 bp

Genome Length

10138651 bp

Protein-coding Genes

9480 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methyltransferase domain-containing proteinBKD09_RS28730Not AvailableNegative5929971 - 593076529018.2
glxa family transcriptional regulatorBKD09_RS28735Not AvailableNegative5930801 - 593174233898.6
dj-1/pfpi family proteinBKD09_RS28740Not AvailablePositive5931837 - 593252324235.3
nadh:ubiquinone oxidoreductase subunit ndufa12BKD09_RS28745Not AvailableNegative5932934 - 593334115679.2
ba14k family proteinBKD09_RS28750Not AvailablePositive5933589 - 593420920287.4
response regulatorBKD09_RS28755Not AvailablePositive5934456 - 593486914938.2
chase3 domain-containing proteinBKD09_RS28760Not AvailablePositive5934866 - 593712481357.0
autotransporter outer membrane beta-barrel domain-containing proteinBKD09_RS28770Not AvailablePositive5937461 - 5941822129741.0
dmt family transporterBKD09_RS28775Not AvailableNegative5941838 - 594273431172.6
vitamin b12-dependent ribonucleotide reductaseBKD09_RS28780Not AvailablePositive5943478 - 5947245137580.0

Displaying genes 5751 – 5760 of 9556 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.