Bradyrhizobium japonicum strain J5

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium japonicum strain J5 is a Gram-negative, rod-shaped bacterium that primarily inhabits soybean fields. This strain possesses a single replicon and is characterized by the presence of flagella, which facilitates its motility in soil and rhizosphere environments. B. japonicum strain J5 is known for its symbiotic relationship with various host plants, notably Glycine max (soybean). Beyond soybeans, it can also associate with other plant species, including Aeschynomene, Neptunia, and Sesbania. Additionally, it has been observed to interact with several green algae, such as Chlamydomonas reinhardtii, Chlorella vulgaris, and Scenedesmus sp., as well as Botryococcus braunii and members of the Chlorophyta group. The ability of B. japonicum strain J5 to form symbiotic relationships with both plants and algae highlights its ecological versatility and potential role in nutrient cycling within agricultural systems. By fixing atmospheric nitrogen, this strain contributes to soil fertility, which is particularly beneficial in soybean cultivation. The presence of such microorganisms in soil ecosystems underscores their importance in sustainable agriculture and their potential to enhance crop yields while minimizing chemical fertilizer use. The accession number for B. japonicum strain J5 is NZ_CP017637.1, which can be referenced for further genomic insights.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium japonicum
Strainstrain J5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bradyrhizobium japonicum strain J5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoybean fields
Biotic relationshipNot Available
Host(s)Homo sapiens, Chlamydomonas reinhardtii, Chlorella vulgaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium japonicum strain J5 chromosome, complete genome.

Gene Summary

Adenine Count

1860975 bp

Thymine Count

1858608 bp

Guanine Count

3204448 bp

Cytosine Count

3214620 bp

Genome Length

10138651 bp

Protein-coding Genes

9480 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ump kinaseBKD09_RS25260Not AvailablePositive5188545 - 518926124886.0
ribosome recycling factorBKD09_RS25265Not AvailablePositive5189325 - 518988820803.1
isoprenyl transferaseBKD09_RS25270Not AvailablePositive5189983 - 519074127823.9
phosphatidate cytidylyltransferaseBKD09_RS25275Not AvailablePositive5190738 - 519158028482.7
1-deoxy-d-xylulose-5-phosphate reductoisomeraseBKD09_RS25280Not AvailablePositive5191585 - 519280842775.2
rip metalloprotease rsepBKD09_RS25285Not AvailablePositive5192853 - 519400440655.7
outer membrane protein assembly factor bamaBKD09_RS25290Not AvailablePositive5194179 - 519671993000.9
udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferaseBKD09_RS25295Not AvailablePositive5196848 - 519791537211.8
3-hydroxyacyl-acp dehydratase fabzBKD09_RS25300Not AvailablePositive5197912 - 519837317236.1
ktsc domain-containing proteinBKD09_RS25305Not AvailableNegative5198398 - 519872111892.3

Displaying genes 5051 – 5060 of 9556 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.