Bradyrhizobium japonicum strain J5

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium japonicum strain J5 is a Gram-negative, rod-shaped bacterium that primarily inhabits soybean fields. This strain possesses a single replicon and is characterized by the presence of flagella, which facilitates its motility in soil and rhizosphere environments. B. japonicum strain J5 is known for its symbiotic relationship with various host plants, notably Glycine max (soybean). Beyond soybeans, it can also associate with other plant species, including Aeschynomene, Neptunia, and Sesbania. Additionally, it has been observed to interact with several green algae, such as Chlamydomonas reinhardtii, Chlorella vulgaris, and Scenedesmus sp., as well as Botryococcus braunii and members of the Chlorophyta group. The ability of B. japonicum strain J5 to form symbiotic relationships with both plants and algae highlights its ecological versatility and potential role in nutrient cycling within agricultural systems. By fixing atmospheric nitrogen, this strain contributes to soil fertility, which is particularly beneficial in soybean cultivation. The presence of such microorganisms in soil ecosystems underscores their importance in sustainable agriculture and their potential to enhance crop yields while minimizing chemical fertilizer use. The accession number for B. japonicum strain J5 is NZ_CP017637.1, which can be referenced for further genomic insights.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium japonicum
Strainstrain J5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bradyrhizobium japonicum strain J5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoybean fields
Biotic relationshipNot Available
Host(s)Homo sapiens, Chlamydomonas reinhardtii, Chlorella vulgaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium japonicum strain J5 chromosome, complete genome.

Gene Summary

Adenine Count

1860975 bp

Thymine Count

1858608 bp

Guanine Count

3204448 bp

Cytosine Count

3214620 bp

Genome Length

10138651 bp

Protein-coding Genes

9480 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-oxoacid:ferredoxin oxidoreductase subunit betaBKD09_RS12440Not AvailableNegative2619852 - 262090737568.4
2-oxoacid:acceptor oxidoreductase subunit alphaBKD09_RS12445Not AvailableNegative2620904 - 262275168073.2
fad-dependent oxidoreductaseBKD09_RS12450Not AvailableNegative2622721 - 262452066292.4
duf4286 family proteinBKD09_RS12455Not AvailableNegative2624756 - 262543324700.4
prolyl aminopeptidaseBKD09_RS12460Not AvailableNegative2625577 - 262656336099.8
pyrroloquinoline quinone biosynthesis protein pqqeBKD09_RS12465Not AvailableNegative2626553 - 262774644160.6
pyrroloquinoline quinone biosynthesis peptide chaperone pqqdBKD09_RS12470Not AvailableNegative2627743 - 262805411324.7
pyrroloquinoline-quinone synthase pqqcBKD09_RS12475Not AvailableNegative2628067 - 262884629074.6
pyrroloquinoline quinone biosynthesis protein pqqbBKD09_RS12480Not AvailableNegative2628843 - 262977232965.4
pyrroloquinoline quinone precursor peptide pqqaBKD09_RS12485Not AvailableNegative2629897 - 26299772953.75

Displaying genes 2511 – 2520 of 9556 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.