Bradyrhizobium japonicum strain J5

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium japonicum strain J5 is a Gram-negative, rod-shaped bacterium that primarily inhabits soybean fields. This strain possesses a single replicon and is characterized by the presence of flagella, which facilitates its motility in soil and rhizosphere environments. B. japonicum strain J5 is known for its symbiotic relationship with various host plants, notably Glycine max (soybean). Beyond soybeans, it can also associate with other plant species, including Aeschynomene, Neptunia, and Sesbania. Additionally, it has been observed to interact with several green algae, such as Chlamydomonas reinhardtii, Chlorella vulgaris, and Scenedesmus sp., as well as Botryococcus braunii and members of the Chlorophyta group. The ability of B. japonicum strain J5 to form symbiotic relationships with both plants and algae highlights its ecological versatility and potential role in nutrient cycling within agricultural systems. By fixing atmospheric nitrogen, this strain contributes to soil fertility, which is particularly beneficial in soybean cultivation. The presence of such microorganisms in soil ecosystems underscores their importance in sustainable agriculture and their potential to enhance crop yields while minimizing chemical fertilizer use. The accession number for B. japonicum strain J5 is NZ_CP017637.1, which can be referenced for further genomic insights.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium japonicum
Strainstrain J5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bradyrhizobium japonicum strain J5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoybean fields
Biotic relationshipNot Available
Host(s)Homo sapiens, Chlamydomonas reinhardtii, Chlorella vulgaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium japonicum strain J5 chromosome, complete genome.

Gene Summary

Adenine Count

1860975 bp

Thymine Count

1858608 bp

Guanine Count

3204448 bp

Cytosine Count

3214620 bp

Genome Length

10138651 bp

Protein-coding Genes

9480 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2865 domain-containing proteinBKD09_RS05795Not AvailableNegative1239300 - 124008227015.0
orotate phosphoribosyltransferaseBKD09_RS05800Not AvailableNegative1240315 - 124087820193.5
glutathione s-transferase family proteinBKD09_RS05805Not AvailablePositive1241050 - 124167623496.7
lyse family translocatorBKD09_RS05810Not AvailableNegative1241863 - 124249822222.2
dna polymerase iBKD09_RS05815Not AvailableNegative1242741 - 1245782110457.0
acyltransferase family proteinBKD09_RS05820Not AvailableNegative1245998 - 124706539320.8
udp-glucose dehydrogenase family proteinBKD09_RS05825Not AvailablePositive1247258 - 124857447248.8
atp-dependent helicase hrpbBKD09_RS05830Not AvailablePositive1248691 - 125116889261.5
tigr02281 family clan aa aspartic proteaseBKD09_RS05835Not AvailablePositive1251298 - 125181017966.8
phosphomannomutase/phosphoglucomutaseBKD09_RS05840Not AvailablePositive1252020 - 125351954525.6

Displaying genes 1171 – 1180 of 9556 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.