Urechidicola croceus strain LPB0138

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Urechidicola

Description

Urechidicola croceus strain LPB0138 is characterized by having a single replicon, which is significant in understanding its genetic structure and replication mechanisms. The strain is cataloged under the accession number NZ_CP017478.1, providing a reference for researchers looking to access its genomic information. As a member of the microbiota, Urechidicola croceus may play a role in its ecological niche. While specific interactions and ecological functions are not detailed in the available data, the existence of a single replicon suggests a streamlined genetic organization, which could be advantageous for adaptation to its environment. This trait may reflect a specialized lifestyle or ecological role within its habitat, potentially influencing microbial community dynamics. Understanding the genomic characteristics of Urechidicola croceus strain LPB0138 can contribute to broader studies of microbial ecology, particularly in contexts where this organism is present. Its single-replicon structure might provide insights into evolutionary strategies and adaptability in various environments. Further research into its ecological roles and interactions could expand knowledge on the functions and significance of this strain within its microbial community.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusUrechidicola
SpeciesUrechidicola croceus
Strainstrain LPB0138

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Urechidicola croceus strain LPB0138 chromosome, complete genome.

Gene Summary

Adenine Count

1183353 bp

Thymine Count

1202850 bp

Guanine Count

517673 bp

Cytosine Count

522246 bp

Genome Length

3426122 bp

Protein-coding Genes

3017 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanine--d-alanine ligaseLPB138_RS14870Not AvailableNegative3355825 - 335679936395.9
pasta domain-containing proteinLPB138_RS14875Not AvailablePositive3356891 - 335744821044.8
rlua family pseudouridine synthaseLPB138_RS14880Not AvailablePositive3357449 - 335847439009.4
hypothetical proteinLPB138_RS14885Not AvailableNegative3358625 - 335907417681.5
outer membrane beta-barrel family proteinLPB138_RS14890Not AvailableNegative3359212 - 336159689462.6
hypothetical proteinLPB138_RS16050Not AvailableNegative3361692 - 33618235059.01
duf456 domain-containing proteinLPB138_RS14895Not AvailableNegative3361938 - 336232714687.7
rna polymerase sigma factorLPB138_RS14900Not AvailableNegative3362341 - 336288320990.9
voc family proteinLPB138_RS14905Not AvailablePositive3363147 - 336380325504.0
peroxide stress protein yaaaLPB138_RS14910Not AvailablePositive3363813 - 336457128906.0

Displaying genes 3001 – 3010 of 3067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.