Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Hydrogenophaga
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Hydrogenophaga |
| Species | Hydrogenophaga crassostreae |
| Strain | strain LPB0072 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
959813 bp
Thymine Count
953339 bp
Guanine Count
1515691 bp
Cytosine Count
1515289 bp
Genome Length
4944132 bp
Protein-coding Genes
4558 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| extradiol ring-cleavage dioxygenase | LPB072_RS19530 | Not Available | Positive | 4223947 - 4224834 | 32959.0 |
| fumarylacetoacetate hydrolase family protein | LPB072_RS19535 | Not Available | Positive | 4224854 - 4225798 | 34539.3 |
| aldehyde dehydrogenase family protein | LPB072_RS19540 | Not Available | Positive | 4225888 - 4227339 | 50664.5 |
| trap transporter substrate-binding protein | LPB072_RS19545 | Not Available | Positive | 4227412 - 4228452 | 37725.7 |
| lysr family transcriptional regulator | LPB072_RS19550 | Not Available | Negative | 4228663 - 4229604 | 33657.8 |
| doxx family protein | LPB072_RS19555 | Not Available | Positive | 4229666 - 4230115 | 15844.7 |
| doda-type extradiol aromatic ring-opening family dioxygenase | LPB072_RS19560 | Not Available | Positive | 4230157 - 4231050 | 32724.2 |
| mipa/ompv family protein | LPB072_RS19565 | Not Available | Positive | 4231296 - 4232078 | 28544.1 |
| hypothetical protein | LPB072_RS23565 | Not Available | Negative | 4232333 - 4232548 | 7576.29 |
| hypothetical protein | LPB072_RS23570 | Not Available | Positive | 4232688 - 4232852 | 5981.43 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
