Hydrogenophaga crassostreae strain LPB0072

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Hydrogenophaga

Description

Hydrogenophaga crassostreae strain LPB0072 is a Gram-negative, aerobic bacterium characterized by its rod shape and motility. This strain thrives optimally at a temperature of 25°C, indicating its classification as mesophilic, which suggests it grows best in moderate temperature ranges typically found in natural environments. The genome of H. crassostreae strain LPB0072 is notably composed of a single replicon, as indicated by its accession number NZ_CP017476.1. This genetic feature may have implications for its replication and adaptability in various ecological niches. Given its aerobic nature, H. crassostreae strain LPB0072 likely plays a significant role in the biogeochemical cycling of elements, particularly in environments where oxygen is present. The motility of this strain suggests that it can navigate through substrates, allowing it to access nutrients and interact with other microorganisms effectively. In summary, Hydrogenophaga crassostreae strain LPB0072 exhibits traits that highlight its adaptability to aerobic, mesophilic environments, potentially contributing to its ecological role in nutrient cycling and microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusHydrogenophaga
SpeciesHydrogenophaga crassostreae
Strainstrain LPB0072

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hydrogenophaga crassostreae strain LPB0072 chromosome, complete

Gene Summary

Adenine Count

959813 bp

Thymine Count

953339 bp

Guanine Count

1515691 bp

Cytosine Count

1515289 bp

Genome Length

4944132 bp

Protein-coding Genes

4558 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcription antitermination factor nusbLPB072_RS08775Not AvailableNegative1891167 - 189169719291.9
6,7-dimethyl-8-ribityllumazine synthaseLPB072_RS08780Not AvailableNegative1891837 - 189230116528.0
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase iiLPB072_RS08785Not AvailableNegative1892333 - 189345740055.2
riboflavin synthaseLPB072_RS08790Not AvailableNegative1893454 - 189410122720.3
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdLPB072_RS08795Not AvailableNegative1894201 - 189529538892.0
type iv pilin proteinLPB072_RS08800Not AvailableNegative1895382 - 189588517802.2
pilus assembly proteinLPB072_RS08805Not AvailableNegative1895897 - 1900246155967.0
hypothetical proteinLPB072_RS08810Not AvailableNegative1900276 - 190088121540.6
pilw family proteinLPB072_RS08815Not AvailableNegative1900916 - 190194435870.2
type iv pilus modification protein pilvLPB072_RS08820Not AvailableNegative1901941 - 190255821102.8

Displaying genes 1771 – 1780 of 4612 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.