Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Hydrogenophaga
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Hydrogenophaga |
| Species | Hydrogenophaga crassostreae |
| Strain | strain LPB0072 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
959813 bp
Thymine Count
953339 bp
Guanine Count
1515691 bp
Cytosine Count
1515289 bp
Genome Length
4944132 bp
Protein-coding Genes
4558 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna helicase ding | LPB072_RS00560 | Not Available | Positive | 112975 - 115314 | 83829.4 |
| copd family protein | LPB072_RS00565 | Not Available | Positive | 115374 - 115844 | 16911.9 |
| zf-hc2 domain-containing protein | LPB072_RS00570 | Not Available | Negative | 116314 - 116562 | 9328.31 |
| sigma-70 family rna polymerase sigma factor | LPB072_RS00575 | Not Available | Negative | 116559 - 117203 | 24067.5 |
| duf4148 domain-containing protein | LPB072_RS00580 | Not Available | Negative | 117428 - 117757 | 11508.6 |
| metal-dependent hydrolase | LPB072_RS00585 | Not Available | Negative | 117942 - 118961 | 37329.3 |
| protocatechuate 3,4-dioxygenase | LPB072_RS00590 | Not Available | Negative | 119060 - 119719 | 24008.4 |
| bifunctional acetate--coa ligase family protein/gnat family n-acetyltransferase | LPB072_RS00595 | Not Available | Negative | 119754 - 122426 | 94813.5 |
| duf502 domain-containing protein | LPB072_RS00600 | Not Available | Negative | 122423 - 123022 | 22323.7 |
| hypothetical protein | LPB072_RS00605 | Not Available | Positive | 123277 - 123597 | 11553.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
