Porphyrobacter sp. LM 6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Erythrobacteraceae

Genus

Porphyrobacter

Description

Porphyrobacter sp. LM 6 is characterized by possessing a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number NZ_CP017113.1, which provides a reference for genomic studies and further research into its characteristics and potential applications. The traits of Porphyrobacter sp. LM 6 suggest that it may play a role in specific ecological niches, possibly related to its metabolic capabilities. While specific metabolic pathways and environmental interactions are not detailed in the provided data, the presence of a single replicon often implies a level of specialization that could be advantageous in certain habitats, such as those with limited resources or specific nutrient profiles. Understanding the genomic configuration of Porphyrobacter sp. LM 6 can provide insights into its biological functions and ecological roles. The single replicon structure may facilitate rapid adaptation and growth under changing environmental conditions, which is a significant advantage for survival in diverse ecological contexts. Further research and exploration of this organism could illuminate its potential contributions to microbial communities and its interactions within those ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyErythrobacteraceae
GenusPorphyrobacter
SpeciesPorphyrobacter sp. LM 6
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyrobacter sp. LM 6 chromosome, complete genome.

Gene Summary

Adenine Count

526847 bp

Thymine Count

524335 bp

Guanine Count

961925 bp

Cytosine Count

966150 bp

Genome Length

2979257 bp

Protein-coding Genes

2836 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
m48 family metallopeptidaseBG023_RS00030Not AvailablePositive4673 - 585443333.4
endonuclease iiiBG023_RS00035Not AvailablePositive5851 - 651324688.8
hypothetical proteinBG023_RS00040Not AvailablePositive6569 - 698514845.8
thermonuclease family proteinBG023_RS00050Not AvailablePositive7055 - 766322928.6
dicarboxylate/amino acid:cation symporterBG023_RS00055Not AvailableNegative7673 - 899846879.7
succinyl-diaminopimelate desuccinylaseBG023_RS00060Not AvailableNegative9024 - 1017540189.0
cupin domain-containing proteinBG023_RS00065Not AvailablePositive10205 - 1067216575.3
glutathione s-transferase family proteinBG023_RS00070Not AvailableNegative10669 - 1133125125.0
voc family proteinBG023_RS00075Not AvailablePositive11438 - 1186015240.1
ribosome biogenesis gtp-binding protein yiha/ysxcBG023_RS00080Not AvailableNegative11876 - 1255624433.7

Displaying genes 51 – 60 of 2914 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.