Porphyrobacter sp. LM 6

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Erythrobacteraceae

Genus

Porphyrobacter

Description

Porphyrobacter sp. LM 6 is characterized by possessing a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number NZ_CP017113.1, which provides a reference for genomic studies and further research into its characteristics and potential applications. The traits of Porphyrobacter sp. LM 6 suggest that it may play a role in specific ecological niches, possibly related to its metabolic capabilities. While specific metabolic pathways and environmental interactions are not detailed in the provided data, the presence of a single replicon often implies a level of specialization that could be advantageous in certain habitats, such as those with limited resources or specific nutrient profiles. Understanding the genomic configuration of Porphyrobacter sp. LM 6 can provide insights into its biological functions and ecological roles. The single replicon structure may facilitate rapid adaptation and growth under changing environmental conditions, which is a significant advantage for survival in diverse ecological contexts. Further research and exploration of this organism could illuminate its potential contributions to microbial communities and its interactions within those ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyErythrobacteraceae
GenusPorphyrobacter
SpeciesPorphyrobacter sp. LM 6
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyrobacter sp. LM 6 chromosome, complete genome.

Gene Summary

Adenine Count

526847 bp

Thymine Count

524335 bp

Guanine Count

961925 bp

Cytosine Count

966150 bp

Genome Length

2979257 bp

Protein-coding Genes

2836 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf547 domain-containing proteinBG023_RS04845Not AvailableNegative1000876 - 100201241783.5
translation initiation factor if-3BG023_RS04850Not AvailableNegative1002287 - 100276618317.4
marr family transcriptional regulatorBG023_RS04855Not AvailablePositive1003071 - 100392230864.2
ligase-associated dna damage response endonuclease pdemBG023_RS04860Not AvailableNegative1003919 - 100461425075.3
oxygen-dependent coproporphyrinogen oxidaseBG023_RS04865Not AvailablePositive1004753 - 100561031982.4
family 16 glycosylhydrolaseBG023_RS04870Not AvailableNegative1005627 - 100652033084.6
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseBG023_RS04875Not AvailablePositive1006643 - 100873378189.1
duf1905 domain-containing proteinBG023_RS04880Not AvailableNegative1008743 - 100904810677.0
peptidylprolyl isomeraseBG023_RS04885Not AvailableNegative1009045 - 101004936526.5
Trna-serNot AvailableNot AvailablePositive1010277 - 1010367Not Available

Displaying genes 1031 – 1040 of 2914 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.