Serratia surfactantfaciens strain YD25

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Serratia

Description

Serratia surfactantfaciens strain YD25 is a gram-negative, rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This strain contains a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. The accession number for this strain is NZ_CP016948.1, which provides a reference for genomic data and additional research. The motility afforded by its flagella suggests potential ecological roles in diverse habitats, allowing Serratia surfactantfaciens YD25 to navigate through different media, which can be crucial for survival in fluctuating environmental conditions. As a member of the Serratia genus, this strain may be involved in various biogeochemical processes, including the degradation of organic compounds and potential interactions with other microorganisms. Understanding the traits of Serratia surfactantfaciens YD25 can provide insights into its ecological niche and potential applications in bioremediation or agriculture, where motile bacteria play significant roles in nutrient cycling and organic matter decomposition. The combination of its gram-negative cell wall structure and motility may also influence its interactions with eukaryotic organisms and other microbial communities, highlighting the importance of this strain in microbiological and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusSerratia
SpeciesSerratia surfactantfaciens
Strainstrain YD25

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Serratia surfactantfaciens strain YD25
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Serratia surfactantfaciens strain YD25 chromosome, complete

Gene Summary

Adenine Count

1037806 bp

Thymine Count

1029388 bp

Guanine Count

1524394 bp

Cytosine Count

1526056 bp

Genome Length

5117644 bp

Protein-coding Genes

4703 genes

Non-Coding Genes

185 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane-bound lytic murein transglycosylase mltcATE40_RS17460Not AvailablePositive3713886 - 371496239951.9
ornithine decarboxylase spefATE40_RS17465Not AvailableNegative3715013 - 371717880728.6
Trna-pheNot AvailableNot AvailablePositive3717882 - 3717957Not Available
l,d-transpeptidase family proteinATE40_RS17475Not AvailablePositive3717977 - 371943753098.7
lysine n(6)-hydroxylase/l-ornithine n(5)-oxygenase family proteinATE40_RS17480Not AvailablePositive3721020 - 372231548770.8
atp-grasp fold amidoligase family proteinATE40_RS17485Not AvailablePositive3722356 - 372324033874.7
alpha/beta hydrolaseATE40_RS17490Not AvailablePositive3723858 - 372477232924.0
gnat family n-acetyltransferaseATE40_RS17495Not AvailablePositive3725201 - 372561115873.7
pas and helix-turn-helix domain-containing proteinATE40_RS17500Not AvailablePositive3725639 - 372632826828.8
cytosine permeaseATE40_RS17505Not AvailablePositive3726349 - 372765045515.0

Displaying genes 3571 – 3580 of 4888 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.