Planococcus plakortidis strain DSM 23997

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Caryophanaceae

Genus

Planococcus

Description

Planococcus plakortidis strain DSM 23997 is a Gram-positive bacterium characterized by the presence of flagella, which suggests motility. This strain is notable for having a single replicon, indicating a simplified genomic organization that may facilitate efficient replication processes. The genomic information for this strain is accessible under the accession number NZ_CP016539.2. The Gram-positive nature of Planococcus plakortidis suggests that it possesses a thick peptidoglycan layer, which is a significant factor in its structural integrity and may influence its interactions with the environment and other microorganisms. The presence of flagella may enhance its ability to colonize different niches, potentially allowing it to thrive in diverse habitats. Ecologically, members of the Planococcus genus are often found in various environments, including marine and terrestrial ecosystems. Their motility could play a crucial role in their ecological strategies, such as searching for nutrients or escaping unfavorable conditions. The unique traits of Planococcus plakortidis strain DSM 23997, including its Gram-positive status and motility, may contribute to its adaptability and survival in competitive environments, highlighting its potential ecological significance.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyCaryophanaceae
GenusPlanococcus
SpeciesPlanococcus plakortidis
Strainstrain DSM 23997

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planococcus plakortidis strain DSM 23997 chromosome, complete

Gene Summary

Adenine Count

819213 bp

Thymine Count

812466 bp

Guanine Count

817940 bp

Cytosine Count

812199 bp

Genome Length

3261818 bp

Protein-coding Genes

3190 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yitt family proteinBBI15_RS13145O34927Negative2621861 - 262245121414.8
cys-trna(pro) deacylaseBBI15_RS13150O31650Negative2622506 - 262299417336.3
dna topoisomerase iiiBBI15_RS13155Q65N90Negative2623009 - 262516881073.5
nadph-dependent fmn reductaseBBI15_RS13160A4IT49Negative2625671 - 262624021791.0
sodium:proton antiporterBBI15_RS13165Not AvailableNegative2626391 - 262821467240.6
se1832 family proteinBBI15_RS13170Not AvailablePositive2628373 - 26285557129.53
abc-f family atp-binding cassette domain-containing proteinBBI15_RS13175O34512Positive2628593 - 263015858943.8
phospholipase d family proteinBBI15_RS13180Not AvailableNegative2631269 - 263271754527.5
rna polymerase sigma factorBBI15_RS13185A0QTP2Negative2632828 - 263336421048.5
hemolysin family proteinBBI15_RS13190Q57017Negative2633503 - 263477747875.8

Displaying genes 2671 – 2680 of 3292 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

203 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 203 metabolites

Health Effects

No health effects information available for this bacterium.