Vibrio scophthalmi strain VS-05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-05 is characterized by having four replicons, which are distinct genetic elements that contribute to its genomic architecture. This strain is cataloged under several accessions, including NZ_CP016415.1, NZ_CP016416.1, NZ_CP016417.1, and NZ_CP016414.1, indicating its availability in genomic databases for further study. The presence of multiple replicons in Vibrio scophthalmi strain VS-05 may suggest a complex genetic organization that could facilitate adaptability and resilience in various environments. This trait is notable in marine bacteria, where diverse genetic elements can enhance survival strategies, particularly in fluctuating ecological conditions. Understanding the genomic structure of Vibrio scophthalmi strain VS-05 can provide insights into its potential ecological roles, especially in marine ecosystems where it may interact with other microbial communities. The genetic diversity inherent in the strain may allow it to thrive in different niches, contributing to nutrient cycling and the overall health of the marine environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-05 chromosome 2, complete sequence.

Gene Summary

Adenine Count

408233 bp

Thymine Count

411806 bp

Guanine Count

324856 bp

Cytosine Count

322319 bp

Genome Length

1467214 bp

Protein-coding Genes

1282 genes

Non-Coding Genes

10 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
primosomal protein n'VSVS05_RS12780Not AvailableNegative2808838 - 281103981819.9
50s ribosomal protein l31VSVS05_RS12785Not AvailablePositive2811358 - 28115767985.5
malic enzyme-like nad(p)-binding proteinVSVS05_RS12790Not AvailablePositive2811823 - 281309746021.5
eal and hdod domain-containing proteinVSVS05_RS12795Not AvailableNegative2813254 - 281357211091.9
o-succinylhomoserine (thiol)-lyaseVSVS05_RS12800Not AvailablePositive2813814 - 281498042453.5
bifunctional aspartate kinase/homoserine dehydrogenase iiVSVS05_RS12805Not AvailablePositive2814981 - 281739287993.5
methylenetetrahydrofolate reductaseVSVS05_RS12810Not AvailablePositive2817689 - 281857932803.8
cell division protein zapbVSVS05_RS12815Not AvailableNegative2818702 - 28189449260.88
class ii fructose-bisphosphataseVSVS05_RS12820Not AvailablePositive2819258 - 282026535704.4
sensor domain-containing diguanylate cyclaseVSVS05_RS12825Not AvailableNegative2820338 - 282173552952.1

Displaying genes 4001 – 4010 of 4363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.