Vibrio scophthalmi strain VS-05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-05 is characterized by having four replicons, which are distinct genetic elements that contribute to its genomic architecture. This strain is cataloged under several accessions, including NZ_CP016415.1, NZ_CP016416.1, NZ_CP016417.1, and NZ_CP016414.1, indicating its availability in genomic databases for further study. The presence of multiple replicons in Vibrio scophthalmi strain VS-05 may suggest a complex genetic organization that could facilitate adaptability and resilience in various environments. This trait is notable in marine bacteria, where diverse genetic elements can enhance survival strategies, particularly in fluctuating ecological conditions. Understanding the genomic structure of Vibrio scophthalmi strain VS-05 can provide insights into its potential ecological roles, especially in marine ecosystems where it may interact with other microbial communities. The genetic diversity inherent in the strain may allow it to thrive in different niches, contributing to nutrient cycling and the overall health of the marine environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-05 chromosome 2, complete sequence.

Gene Summary

Adenine Count

408233 bp

Thymine Count

411806 bp

Guanine Count

324856 bp

Cytosine Count

322319 bp

Genome Length

1467214 bp

Protein-coding Genes

1282 genes

Non-Coding Genes

10 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hlyu family transcriptional regulatorVSVS05_RS16555Not AvailableNegative453564 - 45384210496.7
late competence development comfb family proteinVSVS05_RS16560Not AvailableNegative453934 - 45430514362.0
ggdef domain-containing proteinVSVS05_RS16565Not AvailablePositive454563 - 45579845871.5
solitary outer membrane autotransporter beta-barrel domainVSVS05_RS16570Not AvailableNegative455847 - 45682736770.7
diguanylate cyclaseVSVS05_RS16575Not AvailableNegative456867 - 45784436700.3
duf3069 domain-containing proteinVSVS05_RS16580Not AvailablePositive457987 - 45842416504.6
molybdenum abc transporter atp-binding protein modcVSVS05_RS16585Not AvailableNegative458530 - 45964241329.0
molybdate abc transporter permease subunitVSVS05_RS16590Not AvailableNegative459639 - 46030123841.1
molybdate abc transporter substrate-binding proteinVSVS05_RS16595Not AvailableNegative460369 - 46115728404.0
cobyric acid synthaseVSVS05_RS16600Not AvailableNegative461141 - 46261953339.7

Displaying genes 391 – 400 of 4363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.