Vibrio scophthalmi strain VS-05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-05 is characterized by having four replicons, which are distinct genetic elements that contribute to its genomic architecture. This strain is cataloged under several accessions, including NZ_CP016415.1, NZ_CP016416.1, NZ_CP016417.1, and NZ_CP016414.1, indicating its availability in genomic databases for further study. The presence of multiple replicons in Vibrio scophthalmi strain VS-05 may suggest a complex genetic organization that could facilitate adaptability and resilience in various environments. This trait is notable in marine bacteria, where diverse genetic elements can enhance survival strategies, particularly in fluctuating ecological conditions. Understanding the genomic structure of Vibrio scophthalmi strain VS-05 can provide insights into its potential ecological roles, especially in marine ecosystems where it may interact with other microbial communities. The genetic diversity inherent in the strain may allow it to thrive in different niches, contributing to nutrient cycling and the overall health of the marine environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-05 chromosome 2, complete sequence.

Gene Summary

Adenine Count

408233 bp

Thymine Count

411806 bp

Guanine Count

324856 bp

Cytosine Count

322319 bp

Genome Length

1467214 bp

Protein-coding Genes

1282 genes

Non-Coding Genes

10 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
co-chaperone djlaVSVS05_RS11485Not AvailableNegative2548924 - 254977831267.3
lps assembly protein lptdVSVS05_RS11490Not AvailablePositive2549979 - 255235189787.4
peptidylprolyl isomerase suraVSVS05_RS11495Not AvailablePositive2552403 - 255369848140.2
4-hydroxythreonine-4-phosphate dehydrogenase pdxaVSVS05_RS11500Not AvailablePositive2553688 - 255467735531.0
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaVSVS05_RS11505Not AvailablePositive2554674 - 255548030455.1
co2+/mg2+ efflux protein apagVSVS05_RS11510Not AvailablePositive2555544 - 255592414087.9
bis(5'-nucleosyl)-tetraphosphatase (symmetrical) apahVSVS05_RS11515Not AvailablePositive2555934 - 255674030878.9
type 3 dihydrofolate reductaseVSVS05_RS11520Not AvailableNegative2556880 - 255735917748.4
threonine/serine exporter family proteinVSVS05_RS11525Not AvailableNegative2557402 - 255787517265.1
threonine/serine exporter thre family proteinVSVS05_RS11530Not AvailableNegative2557872 - 255863927766.7

Displaying genes 3741 – 3750 of 4363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.