Vibrio scophthalmi strain VS-05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-05 is characterized by having four replicons, which are distinct genetic elements that contribute to its genomic architecture. This strain is cataloged under several accessions, including NZ_CP016415.1, NZ_CP016416.1, NZ_CP016417.1, and NZ_CP016414.1, indicating its availability in genomic databases for further study. The presence of multiple replicons in Vibrio scophthalmi strain VS-05 may suggest a complex genetic organization that could facilitate adaptability and resilience in various environments. This trait is notable in marine bacteria, where diverse genetic elements can enhance survival strategies, particularly in fluctuating ecological conditions. Understanding the genomic structure of Vibrio scophthalmi strain VS-05 can provide insights into its potential ecological roles, especially in marine ecosystems where it may interact with other microbial communities. The genetic diversity inherent in the strain may allow it to thrive in different niches, contributing to nutrient cycling and the overall health of the marine environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-05 chromosome 2, complete sequence.

Gene Summary

Adenine Count

408233 bp

Thymine Count

411806 bp

Guanine Count

324856 bp

Cytosine Count

322319 bp

Genome Length

1467214 bp

Protein-coding Genes

1282 genes

Non-Coding Genes

10 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
single-stranded-dna-specific exonuclease recjVSVS05_RS11385Not AvailableNegative2524730 - 252646963868.6
bifunctional protein-disulfide isomerase/oxidoreductase dsbcVSVS05_RS11390Not AvailableNegative2526512 - 252725827251.7
site-specific tyrosine recombinase xerdVSVS05_RS11395Not AvailableNegative2527294 - 252819034300.4
flavodoxin fldbVSVS05_RS11400Not AvailablePositive2528359 - 252888019432.8
1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampdVSVS05_RS11405Not AvailableNegative2529031 - 252957320660.6
carboxylating nicotinate-nucleotide diphosphorylaseVSVS05_RS11410Not AvailablePositive2529697 - 253058431955.1
membrane lipoprotein lipid attachment site-containing proteinVSVS05_RS22215Not AvailablePositive2530749 - 25308714408.31
lps export abc transporter permease lptgVSVS05_RS11415Not AvailableNegative2530953 - 253202339696.2
lps export abc transporter permease lptfVSVS05_RS11420Not AvailableNegative2532027 - 253313040610.2
leucyl aminopeptidaseVSVS05_RS11425Not AvailablePositive2533323 - 253484355064.3

Displaying genes 3721 – 3730 of 4363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.