Vibrio scophthalmi strain VS-05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-05 is characterized by having four replicons, which are distinct genetic elements that contribute to its genomic architecture. This strain is cataloged under several accessions, including NZ_CP016415.1, NZ_CP016416.1, NZ_CP016417.1, and NZ_CP016414.1, indicating its availability in genomic databases for further study. The presence of multiple replicons in Vibrio scophthalmi strain VS-05 may suggest a complex genetic organization that could facilitate adaptability and resilience in various environments. This trait is notable in marine bacteria, where diverse genetic elements can enhance survival strategies, particularly in fluctuating ecological conditions. Understanding the genomic structure of Vibrio scophthalmi strain VS-05 can provide insights into its potential ecological roles, especially in marine ecosystems where it may interact with other microbial communities. The genetic diversity inherent in the strain may allow it to thrive in different niches, contributing to nutrient cycling and the overall health of the marine environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-05 chromosome 2, complete sequence.

Gene Summary

Adenine Count

408233 bp

Thymine Count

411806 bp

Guanine Count

324856 bp

Cytosine Count

322319 bp

Genome Length

1467214 bp

Protein-coding Genes

1282 genes

Non-Coding Genes

10 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent chaperone clpbVSVS05_RS10780Not AvailableNegative2372182 - 237475596040.0
peptidoglycan editing factor pgefVSVS05_RS10785Not AvailableNegative2374894 - 237563426465.4
23s rrna pseudouridine(1911/1915/1917) synthase rludVSVS05_RS10790Not AvailableNegative2375636 - 237661336708.2
outer membrane protein assembly factor bamdVSVS05_RS10795Not AvailablePositive2376744 - 237746927697.9
lytic transglycosylase fVSVS05_RS10800Not AvailablePositive2377606 - 237905155315.8
ribosome hibernation-promoting factor, hpf/yfia familyVSVS05_RS10805Not AvailablePositive2379412 - 237973812453.9
prephenate dehydrataseVSVS05_RS10810Not AvailablePositive2379979 - 238115744025.8
spermidine/putrescine abc transporter substrate-binding proteinVSVS05_RS10815Not AvailablePositive2381404 - 238236636163.7
eal and hdod domain-containing proteinVSVS05_RS10820Not AvailablePositive2382350 - 238469982703.7
inosine/xanthosine triphosphataseVSVS05_RS10825Not AvailablePositive2384665 - 238519819171.8

Displaying genes 3601 – 3610 of 4363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.