Vibrio scophthalmi strain VS-05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-05 is characterized by having four replicons, which are distinct genetic elements that contribute to its genomic architecture. This strain is cataloged under several accessions, including NZ_CP016415.1, NZ_CP016416.1, NZ_CP016417.1, and NZ_CP016414.1, indicating its availability in genomic databases for further study. The presence of multiple replicons in Vibrio scophthalmi strain VS-05 may suggest a complex genetic organization that could facilitate adaptability and resilience in various environments. This trait is notable in marine bacteria, where diverse genetic elements can enhance survival strategies, particularly in fluctuating ecological conditions. Understanding the genomic structure of Vibrio scophthalmi strain VS-05 can provide insights into its potential ecological roles, especially in marine ecosystems where it may interact with other microbial communities. The genetic diversity inherent in the strain may allow it to thrive in different niches, contributing to nutrient cycling and the overall health of the marine environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-05 chromosome 2, complete sequence.

Gene Summary

Adenine Count

408233 bp

Thymine Count

411806 bp

Guanine Count

324856 bp

Cytosine Count

322319 bp

Genome Length

1467214 bp

Protein-coding Genes

1282 genes

Non-Coding Genes

10 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl-acp--udp-n-acetylglucosamine o-acyltransferaseVSVS05_RS10380Not AvailableNegative2294298 - 229508628247.0
3-hydroxyacyl-acp dehydratase fabzVSVS05_RS10385Not AvailableNegative2295088 - 229554016847.4
udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferaseVSVS05_RS10390Not AvailableNegative2295692 - 229672336040.3
omph family outer membrane proteinVSVS05_RS10395Not AvailableNegative2296730 - 229723919035.1
outer membrane protein assembly factor bamaVSVS05_RS10400Not AvailableNegative2297254 - 229965688580.5
sigma e protease regulator rsepVSVS05_RS10405Not AvailableNegative2299696 - 230105449088.9
1-deoxy-d-xylulose-5-phosphate reductoisomeraseVSVS05_RS10410Not AvailableNegative2301051 - 230225943804.0
phosphatidate cytidylyltransferaseVSVS05_RS10415Not AvailableNegative2302305 - 230314730545.1
polyprenyl diphosphate synthaseVSVS05_RS10420Not AvailableNegative2303158 - 230391328210.1
ribosome recycling factorVSVS05_RS10425Not AvailableNegative2304007 - 230456420569.9

Displaying genes 3521 – 3530 of 4363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.