Vibrio scophthalmi strain VS-05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-05 is characterized by having four replicons, which are distinct genetic elements that contribute to its genomic architecture. This strain is cataloged under several accessions, including NZ_CP016415.1, NZ_CP016416.1, NZ_CP016417.1, and NZ_CP016414.1, indicating its availability in genomic databases for further study. The presence of multiple replicons in Vibrio scophthalmi strain VS-05 may suggest a complex genetic organization that could facilitate adaptability and resilience in various environments. This trait is notable in marine bacteria, where diverse genetic elements can enhance survival strategies, particularly in fluctuating ecological conditions. Understanding the genomic structure of Vibrio scophthalmi strain VS-05 can provide insights into its potential ecological roles, especially in marine ecosystems where it may interact with other microbial communities. The genetic diversity inherent in the strain may allow it to thrive in different niches, contributing to nutrient cycling and the overall health of the marine environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-05 chromosome 2, complete sequence.

Gene Summary

Adenine Count

408233 bp

Thymine Count

411806 bp

Guanine Count

324856 bp

Cytosine Count

322319 bp

Genome Length

1467214 bp

Protein-coding Genes

1282 genes

Non-Coding Genes

10 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelataseVSVS05_RS06240Not AvailablePositive1359321 - 136025635170.4
yajq family cyclic di-gmp-binding proteinVSVS05_RS06245Not AvailableNegative1360319 - 136080418255.7
3-deoxy-7-phosphoheptulonate synthaseVSVS05_RS06250Not AvailableNegative1360826 - 136188138827.4
paai family thioesteraseVSVS05_RS06255Not AvailablePositive1362130 - 136260917735.8
hypothetical proteinVSVS05_RS06260Not AvailableNegative1362606 - 136397653801.5
s1 rna-binding domain-containing proteinVSVS05_RS06265Not AvailablePositive1364077 - 136491030566.9
16s rrna (cytosine(1407)-c(5))-methyltransferase rsmfVSVS05_RS06270Not AvailableNegative1365087 - 136650852596.9
eal and hdod domain-containing proteinVSVS05_RS06275Not AvailableNegative1366651 - 136928594091.9
paraquat-inducible protein aVSVS05_RS06280Not AvailableNegative1369278 - 137057048370.9
abc transporter atp-binding proteinVSVS05_RS06285Not AvailableNegative1370601 - 137239766746.5

Displaying genes 2691 – 2700 of 4363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.