Vibrio scophthalmi strain VS-05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-05 is characterized by having four replicons, which are distinct genetic elements that contribute to its genomic architecture. This strain is cataloged under several accessions, including NZ_CP016415.1, NZ_CP016416.1, NZ_CP016417.1, and NZ_CP016414.1, indicating its availability in genomic databases for further study. The presence of multiple replicons in Vibrio scophthalmi strain VS-05 may suggest a complex genetic organization that could facilitate adaptability and resilience in various environments. This trait is notable in marine bacteria, where diverse genetic elements can enhance survival strategies, particularly in fluctuating ecological conditions. Understanding the genomic structure of Vibrio scophthalmi strain VS-05 can provide insights into its potential ecological roles, especially in marine ecosystems where it may interact with other microbial communities. The genetic diversity inherent in the strain may allow it to thrive in different niches, contributing to nutrient cycling and the overall health of the marine environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-05 chromosome 2, complete sequence.

Gene Summary

Adenine Count

408233 bp

Thymine Count

411806 bp

Guanine Count

324856 bp

Cytosine Count

322319 bp

Genome Length

1467214 bp

Protein-coding Genes

1282 genes

Non-Coding Genes

10 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmnVSVS05_RS02415Not AvailablePositive500821 - 50194542095.6
cytoskeleton protein rodzVSVS05_RS02420Not AvailablePositive502378 - 50333434600.5
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseVSVS05_RS02425Not AvailablePositive503343 - 50446140650.0
histidine--trna ligaseVSVS05_RS02430Not AvailablePositive504497 - 50576547193.7
yfgm family proteinVSVS05_RS02435Not AvailablePositive505870 - 50648422333.1
outer membrane protein assembly factor bambVSVS05_RS02440Not AvailablePositive506496 - 50765641497.9
ribosome biogenesis gtpase derVSVS05_RS02445Not AvailablePositive507843 - 50933655677.9
metal-dependent hydrolaseVSVS05_RS02450Not AvailablePositive509435 - 51034033918.1
zinc ribbon domain-containing proteinVSVS05_RS02455Not AvailablePositive510645 - 5108758882.34
exodeoxyribonuclease vii large subunitVSVS05_RS02460Not AvailableNegative511016 - 51234749535.5

Displaying genes 1971 – 1980 of 4363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.