Vibrio scophthalmi strain VS-05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio scophthalmi strain VS-05 is characterized by having four replicons, which are distinct genetic elements that contribute to its genomic architecture. This strain is cataloged under several accessions, including NZ_CP016415.1, NZ_CP016416.1, NZ_CP016417.1, and NZ_CP016414.1, indicating its availability in genomic databases for further study. The presence of multiple replicons in Vibrio scophthalmi strain VS-05 may suggest a complex genetic organization that could facilitate adaptability and resilience in various environments. This trait is notable in marine bacteria, where diverse genetic elements can enhance survival strategies, particularly in fluctuating ecological conditions. Understanding the genomic structure of Vibrio scophthalmi strain VS-05 can provide insights into its potential ecological roles, especially in marine ecosystems where it may interact with other microbial communities. The genetic diversity inherent in the strain may allow it to thrive in different niches, contributing to nutrient cycling and the overall health of the marine environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio scophthalmi
Strainstrain VS-05

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio scophthalmi strain VS-05
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio scophthalmi strain VS-05 chromosome 2, complete sequence.

Gene Summary

Adenine Count

408233 bp

Thymine Count

411806 bp

Guanine Count

324856 bp

Cytosine Count

322319 bp

Genome Length

1467214 bp

Protein-coding Genes

1282 genes

Non-Coding Genes

10 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
penicillin-binding protein activatorVSVS05_RS01810Not AvailableNegative359277 - 36115769714.4
16s rrna (cytidine(1402)-2'-o)-methyltransferaseVSVS05_RS01815Not AvailablePositive361221 - 36208431585.3
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive362438 - 362869Not Available
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhVSVS05_RS01830Not AvailablePositive363230 - 36418035088.7
cell division protein ftslVSVS05_RS01835Not AvailablePositive364188 - 36450511926.5
peptidoglycan glycosyltransferase ftsiVSVS05_RS01840Not AvailablePositive364502 - 36622962587.4
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseVSVS05_RS01845Not AvailablePositive366244 - 36774053586.0
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseVSVS05_RS01850Not AvailablePositive367737 - 36909547332.5
phospho-n-acetylmuramoyl-pentapeptide- transferaseVSVS05_RS01855Not AvailablePositive369092 - 37017439943.9
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseVSVS05_RS01860Not AvailablePositive370193 - 37150946770.0

Displaying genes 1851 – 1860 of 4363 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.