Rhizobium leguminosarum strain Vaf10

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium leguminosarum strain Vaf10 is a gram-negative, mesophilic, rod-shaped bacterium that thrives in soil environments. This organism is classified as a chemoheterotroph, deriving its energy from organic compounds. It exhibits a single-cell arrangement and possesses flagella, which contributes to its mobility. As an aerobic organism, it requires oxygen for growth and metabolic processes. One of the defining characteristics of R. leguminosarum Vaf10 is its symbiotic relationship with various leguminous plants. It forms nodules on the roots of hosts such as Lens culinaris (lentil), Trifolium species (including Trifolium ambiguum, Trifolium pratense, Trifolium rubens, and Trifolium repens), Vavilovia formosa, Medicago sativa (alfalfa), and Lathyrus oleraceus (grass pea). This symbiosis is crucial for nitrogen fixation, allowing plants to obtain nitrogen from the atmosphere, which is essential for their growth and development. In terms of genetic structure, R. leguminosarum Vaf10 contains five replicons and has a double-membrane system. It is important to note that this strain is nonsporulating, meaning it does not form spores under environmental stress. The ability of R. leguminosarum to engage in symbiotic relationships with a range of leguminous hosts highlights its ecological significance in nitrogen cycling within soil ecosystems, thus contributing to soil fertility and agricultural sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium leguminosarum
Strainstrain Vaf10

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium leguminosarum strain Vaf10
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipSymbiotic
Host(s)Phaseolus vulgaris, Vicia, Lathyrus
Cell arrangementSingles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete

Gene Summary

Adenine Count

124732 bp

Thymine Count

121235 bp

Guanine Count

185721 bp

Cytosine Count

190934 bp

Genome Length

622622 bp

Protein-coding Genes

578 genes

Non-Coding Genes

33 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
malonyl-coa decarboxylaseBA011_RS00310Not AvailablePositive69921 - 7134552543.6
malonyl-coa synthaseBA011_RS00315Not AvailablePositive71342 - 7285654736.7
slc13 family permeaseBA011_RS00320Not AvailablePositive73055 - 7440146457.3
methionine--trna ligaseBA011_RS00325Not AvailablePositive74669 - 7621356483.3
hypothetical proteinBA011_RS40860Not AvailablePositive76378 - 765966853.88
pas domain-containing sensor histidine kinaseBA011_RS00330Not AvailableNegative76679 - 7781841540.0
alpha/beta fold hydrolaseBA011_RS00335Not AvailableNegative77815 - 7860628782.0
gxwxg domain-containing proteinBA011_RS00340Not AvailableNegative78736 - 7924819651.0
biotin transporter bioyBA011_RS00345Not AvailableNegative79423 - 7998619106.4
energy-coupling factor transporter transmembrane protein ecftBA011_RS00350Not AvailableNegative80014 - 8062222267.1

Displaying genes 2421 – 2430 of 7331 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

13 records
Metabolite IDMetabolite nameStructureCAS number
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00032075-methyl-5,6,7,8-tetrahydromethanopterinC31H44N6O16PChemical structure of 5-methyl-5,6,7,8-tetrahydromethanopterinNot available
Average787.694Da
Monoisotopic787.2567871Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034704-(phosphooxy)-L-threonineC4H8NO7PChemical structure of 4-(phosphooxy)-L-threonineNot available
Average213.083Da
Monoisotopic213.0049358Da
BASm0003537(R)-3-hydroxy-2-oxo-4-phosphooxybutanoateC4H4O8PChemical structure of (R)-3-hydroxy-2-oxo-4-phosphooxybutanoateNot available
Average211.043Da
Monoisotopic210.9660248Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0004072alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateC61H100O12P2Chemical structure of alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1087.408Da
Monoisotopic1086.6701Da
BASm00041244-(gamma-L-glutamylamino)butanalC9H16N2O4Chemical structure of 4-(gamma-L-glutamylamino)butanalNot available
Average216.2343Da
Monoisotopic216.11100701Da

Displaying 1–10 of 13 metabolites

Health Effects

No health effects information available for this bacterium.