Rhizobium leguminosarum strain Vaf10

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium leguminosarum strain Vaf10 is a Gram-negative, rod-shaped bacterium that exists as single cells and exhibits aerobic respiration. As a nonsporulating organism, R. leguminosarum strain Vaf10 relies on a chemoheterotrophic lifestyle, deriving energy from organic compounds in its soil habitat. This strain's habitat in soil suggests its potential role in nutrient cycling and interaction with plant roots, particularly in leguminous plants where it is known to participate in symbiotic nitrogen fixation. While specific symbiotic interactions of strain Vaf10 have not been detailed, members of the Rhizobium genus are typically recognized for their ability to form nodules on the roots of legumes, which facilitate the conversion of atmospheric nitrogen into a biologically available form, thereby enhancing soil fertility. The aerobic nature of R. leguminosarum strain Vaf10 indicates its requirement for oxygen to support metabolic processes, which may influence its distribution and activity in various soil environments, especially those with adequate aeration. Overall, the traits of this strain highlight its ecological significance in promoting plant growth and contributing to soil health through nitrogen fixation, emphasizing the intricate relationships between soil microbes and terrestrial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium leguminosarum
Strainstrain Vaf10

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium leguminosarum strain Vaf10
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Rhizobium leguminosarum strain Vaf10


Gene Summary

Adenine Count

124732 bp

Thymine Count

121235 bp

Guanine Count

185721 bp

Cytosine Count

190934 bp

Genome Length

622622 bp

Protein-coding Genes

578 genes

Non-Coding Genes

33 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
TransposaseBA011_RS45500Not Available+345227 - 3454428695.69
Is110 family transposaseBA011_RS33165Not Available+345543 - 34658637979.1
Isppu13, transposase orf3BA011_RS33170Not Available+346974 - 3472199364.19
TransposaseBA011_RS33175Not Available-347188 - 3474609932.16
Putative transposase orfbBA011_RS33180Not Available-347520 - 34865842879.9
TransposaseBA011_RS33190Not Available-348770 - 3489768429.31
Putative host-like proteinBA011_RS33195Not Available+349305 - 34962511350.7
is5/is1182 family transposaseBA011_RS33200Not Available-349670 - 35003712785.0
nitrilase-related carbon-nitrogen hydrolaseBA011_RS33205Not Available+350028 - 35048616754.1
trah family proteinBA011_RS33210Not Available+350502 - 35111921952.3

Displaying genes 1 – 10 of 7331 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

13 records
Metabolite IDMetabolite nameStructureCAS number
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00032075-methyl-5,6,7,8-tetrahydromethanopterinC31H44N6O16PChemical structure of 5-methyl-5,6,7,8-tetrahydromethanopterinNot available
Average787.694Da
Monoisotopic787.2567871Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034704-(phosphooxy)-L-threonineC4H8NO7PChemical structure of 4-(phosphooxy)-L-threonineNot available
Average213.083Da
Monoisotopic213.0049358Da
BASm0003537(R)-3-hydroxy-2-oxo-4-phosphooxybutanoateC4H4O8PChemical structure of (R)-3-hydroxy-2-oxo-4-phosphooxybutanoateNot available
Average211.043Da
Monoisotopic210.9660248Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0004072alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateC61H100O12P2Chemical structure of alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1087.408Da
Monoisotopic1086.6701Da
BASm00041244-(gamma-L-glutamylamino)butanalC9H16N2O4Chemical structure of 4-(gamma-L-glutamylamino)butanalNot available
Average216.2343Da
Monoisotopic216.11100701Da

Displaying 1–10 of 13 metabolites