Ectopseudomonas alcaliphila JAB1

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Ectopseudomonas

Description

Ectopseudomonas alcaliphila JAB1 is an aerobic, rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This organism has been cataloged under the accession number NZ_CP016162.1 and possesses a single replicon, indicating a streamlined genetic architecture. As an aerobic bacterium, Ectopseudomonas alcaliphila JAB1 requires oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. This trait may influence its ecological niche, allowing it to thrive in oxygen-rich habitats, such as soil or water, where it can engage in various biochemical interactions. The flagella present in this species are significant for mobility, enabling Ectopseudomonas alcaliphila JAB1 to navigate its environment effectively. This motility can play a crucial role in nutrient acquisition and colonization of ecological niches, contributing to its survival and proliferation in competitive habitats. In summary, Ectopseudomonas alcaliphila JAB1's aerobic nature and motility via flagella suggest that it occupies ecological niches where oxygen is plentiful, potentially influencing its interactions with other microorganisms and its role in biogeochemical cycles. The presence of a single replicon may also reflect evolutionary adaptations that optimize its efficiency in such environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusEctopseudomonas
SpeciesEctopseudomonas alcaliphila
StrainJAB1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ectopseudomonas alcaliphila JAB1 chromosome, complete genome.

Gene Summary

Adenine Count

998395 bp

Thymine Count

1002174 bp

Guanine Count

1668694 bp

Cytosine Count

1671030 bp

Genome Length

5340293 bp

Protein-coding Genes

4893 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1329 domain-containing proteinUYA_RS20510Not AvailableNegative4413696 - 441501249864.3
duf1329 domain-containing proteinUYA_RS20515Not AvailableNegative4415169 - 441649750078.1
duf1302 family proteinUYA_RS20520Not AvailableNegative4416517 - 441841570060.6
efflux rnd transporter permease subunitUYA_RS20525Not AvailableNegative4418457 - 442092589169.7
wd40/yvtn/bnr-like repeat-containing proteinUYA_RS20530Not AvailableNegative4420937 - 442177929864.7
is30 family transposaseUYA_RS25575Not AvailablePositive4422421 - 44226076035.37
type ii 3-dehydroquinate dehydrataseUYA_RS20540Not AvailablePositive4422818 - 442325815897.1
shikimate dehydrogenaseUYA_RS20545Not AvailablePositive4423263 - 442411429738.0
tetr/acrr family transcriptional regulatorUYA_RS20550Not AvailableNegative4424185 - 442485625585.9
3-dehydroshikimate dehydratase quicUYA_RS20555Not AvailableNegative4424943 - 442685070477.6

Displaying genes 4111 – 4120 of 4986 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.