Ectopseudomonas alcaliphila JAB1

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Ectopseudomonas

Description

Ectopseudomonas alcaliphila JAB1 is an aerobic, rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This organism has been cataloged under the accession number NZ_CP016162.1 and possesses a single replicon, indicating a streamlined genetic architecture. As an aerobic bacterium, Ectopseudomonas alcaliphila JAB1 requires oxygen for its metabolic processes, positioning it within environments where oxygen is readily available. This trait may influence its ecological niche, allowing it to thrive in oxygen-rich habitats, such as soil or water, where it can engage in various biochemical interactions. The flagella present in this species are significant for mobility, enabling Ectopseudomonas alcaliphila JAB1 to navigate its environment effectively. This motility can play a crucial role in nutrient acquisition and colonization of ecological niches, contributing to its survival and proliferation in competitive habitats. In summary, Ectopseudomonas alcaliphila JAB1's aerobic nature and motility via flagella suggest that it occupies ecological niches where oxygen is plentiful, potentially influencing its interactions with other microorganisms and its role in biogeochemical cycles. The presence of a single replicon may also reflect evolutionary adaptations that optimize its efficiency in such environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusEctopseudomonas
SpeciesEctopseudomonas alcaliphila
StrainJAB1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ectopseudomonas alcaliphila JAB1 chromosome, complete genome.

Gene Summary

Adenine Count

998395 bp

Thymine Count

1002174 bp

Guanine Count

1668694 bp

Cytosine Count

1671030 bp

Genome Length

5340293 bp

Protein-coding Genes

4893 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sdr family nad(p)-dependent oxidoreductaseUYA_RS11920Not AvailablePositive2560172 - 256093926970.5
sdr family nad(p)-dependent oxidoreductaseUYA_RS11925Not AvailablePositive2560950 - 256170826199.6
glxa family transcriptional regulatorUYA_RS11930Not AvailablePositive2561797 - 256282837948.1
type ii toxin-antitoxin system hipa family toxinUYA_RS11935Not AvailableNegative2563103 - 256436846806.6
helix-turn-helix domain-containing proteinUYA_RS11940Not AvailableNegative2564361 - 256485817781.7
duf3396 domain-containing proteinUYA_RS11945Not AvailableNegative2565253 - 256634140693.6
vrr-nuc domain-containing proteinUYA_RS11950Not AvailableNegative2566357 - 256703124766.3
paar domain-containing proteinUYA_RS11955Not AvailableNegative2567062 - 256758017354.4
nyn domain-containing proteinUYA_RS11960Not AvailablePositive2568147 - 256895929563.0
radc family proteinUYA_RS11965Not AvailableNegative2568996 - 256950218369.2

Displaying genes 2391 – 2400 of 4986 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.