Pseudomonas sp. TCU-HL1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. TCU-HL1 is characterized by having two replicons, which contribute to its genomic complexity and adaptability. The organism is represented in the genomic databases by two specific accession numbers: NZ_CP015992.1 and NZ_CP015993.1. These replicons may encode essential genes that facilitate various metabolic processes and environmental resilience, traits commonly associated with the Pseudomonas genus. The presence of multiple replicons in Pseudomonas sp. TCU-HL1 could suggest a potential for enhanced genetic diversity and the ability to adapt to varying environmental conditions. This adaptability is a hallmark of many Pseudomonas species, which are known for their versatility in utilizing different substrates and thriving in diverse habitats, including soil, water, and plant surfaces. From a biological and ecological perspective, the dual-replicon structure of Pseudomonas sp. TCU-HL1 could offer insights into its ecological roles, particularly in bioremediation processes. The ability to harbor varied genetic information may enable the strain to degrade pollutants or utilize organic compounds effectively, contributing to nutrient cycling and ecosystem health. Thus, Pseudomonas sp. TCU-HL1 exemplifies the ecological significance of microbial diversity and adaptability in natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. TCU-HL1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. TCU-HL1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. TCU-HL1 isolate Hualien, Taiwan plasmid pTCUH,

Gene Summary

Adenine Count

2467 bp

Thymine Count

2843 bp

Guanine Count

3734 bp

Cytosine Count

3646 bp

Genome Length

12690 bp

Protein-coding Genes

18 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
virb3 family type iv secretion system proteinTHL1_RS17300Not AvailablePositive3734468 - 37347409831.32
conjugal transfer protein trbeTHL1_RS17305Not AvailablePositive3734752 - 373718189624.8
p-type conjugative transfer protein trbjTHL1_RS17310Not AvailablePositive3737178 - 373791227320.6
hypothetical proteinTHL1_RS17315Not AvailablePositive3737925 - 37381106530.8
p-type conjugative transfer protein trblTHL1_RS17320Not AvailablePositive3738107 - 373928539460.7
conjugal transfer protein trbfTHL1_RS17325Not AvailablePositive3739298 - 374000526322.2
p-type conjugative transfer protein trbgTHL1_RS17330Not AvailablePositive3740002 - 374099136077.4
trbi/virb10 family proteinTHL1_RS17335Not AvailablePositive3740994 - 374227445542.8
duf2274 domain-containing proteinTHL1_RS17340Not AvailablePositive3742271 - 37425078871.82
type ii toxin-antitoxin system hipa family toxinTHL1_RS17345Not AvailableNegative3742589 - 374392049600.6

Displaying genes 3561 – 3570 of 5853 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.