Pseudomonas sp. TCU-HL1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. TCU-HL1 is characterized by having two replicons, which contribute to its genomic complexity and adaptability. The organism is represented in the genomic databases by two specific accession numbers: NZ_CP015992.1 and NZ_CP015993.1. These replicons may encode essential genes that facilitate various metabolic processes and environmental resilience, traits commonly associated with the Pseudomonas genus. The presence of multiple replicons in Pseudomonas sp. TCU-HL1 could suggest a potential for enhanced genetic diversity and the ability to adapt to varying environmental conditions. This adaptability is a hallmark of many Pseudomonas species, which are known for their versatility in utilizing different substrates and thriving in diverse habitats, including soil, water, and plant surfaces. From a biological and ecological perspective, the dual-replicon structure of Pseudomonas sp. TCU-HL1 could offer insights into its ecological roles, particularly in bioremediation processes. The ability to harbor varied genetic information may enable the strain to degrade pollutants or utilize organic compounds effectively, contributing to nutrient cycling and ecosystem health. Thus, Pseudomonas sp. TCU-HL1 exemplifies the ecological significance of microbial diversity and adaptability in natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. TCU-HL1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. TCU-HL1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. TCU-HL1 isolate Hualien, Taiwan plasmid pTCUH,

Gene Summary

Adenine Count

2467 bp

Thymine Count

2843 bp

Guanine Count

3734 bp

Cytosine Count

3646 bp

Genome Length

12690 bp

Protein-coding Genes

18 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
agmatine/peptidylarginine deiminaseTHL1_RS14580Not AvailablePositive3164527 - 316565140156.9
aldehyde dehydrogenaseTHL1_RS14585Not AvailableNegative3165742 - 316724453075.3
fad-binding oxidoreductaseTHL1_RS14590Not AvailableNegative3167272 - 316860047663.1
dihydrodipicolinate synthase family proteinTHL1_RS14595Not AvailableNegative3168623 - 316951332429.9
lysr family transcriptional regulatorTHL1_RS14600Not AvailableNegative3169756 - 317070635839.0
aromatic ring-hydroxylating dioxygenase subunit alphaTHL1_RS14605Not AvailablePositive3170944 - 317215545242.1
dmt family transporterTHL1_RS14610Not AvailablePositive3172249 - 317317831567.6
glycine betaine/l-proline abc transporter atp-binding protein provTHL1_RS14615Not AvailablePositive3173422 - 317459442830.8
glycine betaine/l-proline abc transporter permease prowTHL1_RS14620Not AvailablePositive3174647 - 317559434127.0
glycine betaine/l-proline abc transporter substrate-binding protein proxTHL1_RS14625Not AvailablePositive3175666 - 317669738231.3

Displaying genes 3081 – 3090 of 5853 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.