Pseudomonas sp. TCU-HL1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. TCU-HL1 is characterized by having two replicons, which contribute to its genomic complexity and adaptability. The organism is represented in the genomic databases by two specific accession numbers: NZ_CP015992.1 and NZ_CP015993.1. These replicons may encode essential genes that facilitate various metabolic processes and environmental resilience, traits commonly associated with the Pseudomonas genus. The presence of multiple replicons in Pseudomonas sp. TCU-HL1 could suggest a potential for enhanced genetic diversity and the ability to adapt to varying environmental conditions. This adaptability is a hallmark of many Pseudomonas species, which are known for their versatility in utilizing different substrates and thriving in diverse habitats, including soil, water, and plant surfaces. From a biological and ecological perspective, the dual-replicon structure of Pseudomonas sp. TCU-HL1 could offer insights into its ecological roles, particularly in bioremediation processes. The ability to harbor varied genetic information may enable the strain to degrade pollutants or utilize organic compounds effectively, contributing to nutrient cycling and ecosystem health. Thus, Pseudomonas sp. TCU-HL1 exemplifies the ecological significance of microbial diversity and adaptability in natural environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. TCU-HL1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. TCU-HL1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. TCU-HL1 isolate Hualien, Taiwan plasmid pTCUH,

Gene Summary

Adenine Count

2467 bp

Thymine Count

2843 bp

Guanine Count

3734 bp

Cytosine Count

3646 bp

Genome Length

12690 bp

Protein-coding Genes

18 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-carboxymethyl-2-hydroxymuconate delta-isomeraseTHL1_RS13705Not AvailableNegative2965462 - 296587214862.8
3,4-dihydroxyphenylacetate 2,3-dioxygenaseTHL1_RS13710Not AvailableNegative2965884 - 296680733787.0
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseTHL1_RS13715Not AvailableNegative2966919 - 296837952872.5
fumarylacetoacetate hydrolase family proteinTHL1_RS13720Not AvailableNegative2968385 - 296915828592.8
fumarylacetoacetate hydrolase family proteinTHL1_RS13725Not AvailableNegative2969169 - 296982823735.5
4-hydroxyphenylacetate catabolism regulatory protein hpaaTHL1_RS13730Not AvailablePositive2970025 - 297094235071.8
trap transporter substrate-binding proteinTHL1_RS13735Not AvailablePositive2971670 - 297269236483.8
trap transporter small permeaseTHL1_RS13740Not AvailablePositive2972699 - 297322918856.5
trap transporter large permeaseTHL1_RS13745Not AvailablePositive2973226 - 297454846074.1
class ii histone deacetylaseTHL1_RS13750Not AvailableNegative2974700 - 297581840074.0

Displaying genes 2901 – 2910 of 5853 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.