Lelliottia amnigena strain ZB04

aerobic / microaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Lelliottia

Description

Lelliottia amnigena strain ZB04 is an aerobic to microaerophilic bacterium primarily associated with the rhizomes of various plant species. This strain has been identified to inhabit the rhizomes of Zea mays (corn), Zingiber officinale (ginger), and Euphorbia prostrata, indicating its potential role in the rhizosphere of these plants. With a single replicon, Lelliottia amnigena strain ZB04 may exhibit streamlined genetic characteristics that could influence its adaptability and interactions within its ecological niche. The ability to thrive in aerobic and microaerophilic conditions suggests that this bacterium may play a significant role in the microbial community associated with the rhizomes, potentially engaging in nutrient cycling or plant growth promotion. The presence of Lelliottia amnigena strain ZB04 in the rhizomes of economically important crops such as corn and ginger raises interesting questions about its ecological roles and contributions to plant health. The interactions between this bacterium and its host plants could provide insights into beneficial microbial partnerships that enhance plant resilience or nutrient uptake in complex rhizosphere environments. Understanding these relationships may also inform agricultural practices that leverage microbial diversity for improved crop productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusLelliottia
SpeciesLelliottia amnigena
Strainstrain ZB04

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lelliottia amnigena strain ZB04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic / microaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizomes
Biotic relationshipNot Available
Host(s)Zea mays, Zingiber officinale, Euphorbia prostrata
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lelliottia amnigena strain ZB04 chromosome, complete genome.

Gene Summary

Adenine Count

1056547 bp

Thymine Count

1054377 bp

Guanine Count

1251094 bp

Cytosine Count

1254104 bp

Genome Length

4616122 bp

Protein-coding Genes

4154 genes

Non-Coding Genes

181 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2,3-dehydroadipyl-coa hydratase paafA8A57_RS10590P76082Positive2200498 - 220126526975.8
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase paagA8A57_RS10595P77467Positive2201265 - 220205328077.8
3-hydroxyacyl-coa dehydrogenase paahA8A57_RS10600P76083Positive2202055 - 220348251467.9
hydroxyphenylacetyl-coa thioesterase paaiA8A57_RS10605P76084Positive2203472 - 220389414951.7
3-oxoadipyl-coa thiolaseA8A57_RS10610P0C7L3Positive2203894 - 220509941978.8
phenylacetate--coa ligase paakA8A57_RS10615P76085Positive2205126 - 220644549022.7
phenylacetic acid degradation operon negative regulatory protein paaxA8A57_RS10620P76086Positive2206533 - 220746834709.1
phenylacetic acid degradation protein paayA8A57_RS10625P77181Positive2207479 - 220807221555.1
fmn-dependent nadh-azoreductaseA8A57_RS10630A7MEJ8Negative2208127 - 220873221690.9
atp-dependent rna helicase hrpaA8A57_RS10635P43329Positive2208936 - 2212838148766.0

Displaying genes 2151 – 2160 of 4335 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

286 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 286 metabolites

Health Effects

No health effects information available for this bacterium.