Pectobacterium wasabiae CFBP 3304

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium wasabiae CFBP 3304 is a Gram-negative bacterium characterized by the presence of flagella, which contributes to its motility. This species is notable for having a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The genome of P. wasabiae CFBP 3304 is accessible through the accession number NZ_CP015750.1, which provides a resource for further genetic and functional studies. As a member of the Pectobacterium genus, P. wasabiae is associated with soft rot diseases in plants, particularly affecting crops such as vegetables. The presence of flagella suggests that P. wasabiae CFBP 3304 can navigate its environment effectively, potentially aiding in its pathogenicity by reaching host tissues. Understanding the motility and genomic characteristics of this bacterium can provide insights into its ecological role, particularly in agricultural settings where it may impact crop yield and quality. The genomic data available may also enable researchers to explore the molecular mechanisms of pathogenicity and resistance, informing strategies for disease management in affected crops. The study of P. wasabiae CFBP 3304 can contribute to a broader understanding of plant-microbe interactions, emphasizing the importance of microbial traits in ecological dynamics and agricultural health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium wasabiae
StrainCFBP 3304

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium wasabiae CFBP 3304 chromosome, complete genome.

Gene Summary

Adenine Count

1247379 bp

Thymine Count

1246330 bp

Guanine Count

1267085 bp

Cytosine Count

1282434 bp

Genome Length

5043228 bp

Protein-coding Genes

4419 genes

Non-Coding Genes

278 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-phosphoshikimate 1-carboxyvinyltransferaseA7983_RS17300Not AvailablePositive3795504 - 379679346569.1
(d)cmp kinaseA7983_RS17305Not AvailablePositive3797002 - 379767924443.4
30s ribosomal protein s1A7983_RS17310Not AvailablePositive3797796 - 379946961281.8
integration host factor subunit betaA7983_RS17315Not AvailablePositive3799561 - 379984510581.7
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisieA7983_RS17320Not AvailableNegative3799957 - 380058923524.9
imidazole glycerol phosphate synthase subunit hisfA7983_RS17325Not AvailableNegative3800583 - 380135928422.0
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseA7983_RS17330Not AvailableNegative3801341 - 380207826336.5
imidazole glycerol phosphate synthase subunit hishA7983_RS17335Not AvailableNegative3802085 - 380267521285.8
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisbA7983_RS17340Not AvailableNegative3802675 - 380374239786.6
histidinol-phosphate transaminaseA7983_RS17345Not AvailableNegative3803758 - 380483139271.2

Displaying genes 3601 – 3610 of 4697 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.