Pectobacterium wasabiae CFBP 3304

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium wasabiae CFBP 3304 is a Gram-negative bacterium characterized by the presence of flagella, which contributes to its motility. This species is notable for having a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The genome of P. wasabiae CFBP 3304 is accessible through the accession number NZ_CP015750.1, which provides a resource for further genetic and functional studies. As a member of the Pectobacterium genus, P. wasabiae is associated with soft rot diseases in plants, particularly affecting crops such as vegetables. The presence of flagella suggests that P. wasabiae CFBP 3304 can navigate its environment effectively, potentially aiding in its pathogenicity by reaching host tissues. Understanding the motility and genomic characteristics of this bacterium can provide insights into its ecological role, particularly in agricultural settings where it may impact crop yield and quality. The genomic data available may also enable researchers to explore the molecular mechanisms of pathogenicity and resistance, informing strategies for disease management in affected crops. The study of P. wasabiae CFBP 3304 can contribute to a broader understanding of plant-microbe interactions, emphasizing the importance of microbial traits in ecological dynamics and agricultural health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium wasabiae
StrainCFBP 3304

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium wasabiae CFBP 3304 chromosome, complete genome.

Gene Summary

Adenine Count

1247379 bp

Thymine Count

1246330 bp

Guanine Count

1267085 bp

Cytosine Count

1282434 bp

Genome Length

5043228 bp

Protein-coding Genes

4419 genes

Non-Coding Genes

278 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i dna topoisomeraseA7983_RS04955Not AvailableNegative1117627 - 111818420613.0
duf494 family protein smgA7983_RS04960Not AvailableNegative1118205 - 111867818479.0
dna-protecting protein dpraA7983_RS04965Not AvailableNegative1118650 - 111977140595.0
peptide deformylaseA7983_RS04970Not AvailablePositive1119900 - 112041219518.7
methionyl-trna formyltransferaseA7983_RS04975Not AvailablePositive1120436 - 112138334198.3
16s rrna (cytosine(967)-c(5))-methyltransferase rsmbA7983_RS04980Not AvailablePositive1121451 - 112274048199.0
trk system potassium transporter trkaA7983_RS04985Not AvailablePositive1122797 - 112417350186.6
large-conductance mechanosensitive channel protein msclA7983_RS04990Not AvailablePositive1124264 - 112467715105.9
alternative ribosome-rescue factor aA7983_RS04995Not AvailableNegative1124711 - 11249237994.58
50s ribosomal protein l17A7983_RS05000Not AvailableNegative1125046 - 112543814740.8

Displaying genes 1221 – 1230 of 4697 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.