Pseudomonas antarctica strain PAMC 27494

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas antarctica strain PAMC 27494 is characterized by having three replicons, which suggests a complex genomic structure that may contribute to its adaptability in various environments. The strain is associated with three specific accession numbers: NZ_CP015600.1, NZ_CP015601.1, and NZ_CP015602.1. These accession numbers indicate the presence of distinct genomic regions that could be involved in the strain's metabolic pathways and ecological functions. The presence of multiple replicons can enhance the organism's ability to acquire and maintain genetic material that may confer advantages in nutrient utilization, stress resistance, or other ecological interactions. This genomic feature is not uncommon among Pseudomonas species, which are known for their metabolic versatility and ability to thrive in diverse habitats, including extreme conditions. From an ecological perspective, Pseudomonas antarctica strain PAMC 27494 may play a significant role in biogeochemical cycles in its native environment, potentially aiding in nutrient cycling and decomposition processes. The strain's adaptability, as suggested by its genomic configuration, may allow it to occupy various ecological niches, contributing to microbial diversity and ecosystem functioning. Overall, the traits of Pseudomonas antarctica strain PAMC 27494 highlight its potential importance in environmental microbiology and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas antarctica
Strainstrain PAMC 27494

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas antarctica strain PAMC 27494
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas antarctica strain PAMC 27494 chromosome, complete

Gene Summary

Adenine Count

1288199 bp

Thymine Count

1298267 bp

Guanine Count

1927737 bp

Cytosine Count

1927246 bp

Genome Length

6441449 bp

Protein-coding Genes

5627 genes

Non-Coding Genes

366 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alternative ribosome rescue factor arfaA7J50_RS25635Not AvailablePositive5649304 - 56494686085.22
lytic murein transglycosylaseA7J50_RS25640Not AvailablePositive5649530 - 565085547727.7
ld-carboxypeptidaseA7J50_RS25645Not AvailableNegative5651234 - 565216633368.6
lipoyl synthaseA7J50_RS25650Not AvailableNegative5652350 - 565335137339.6
lipoyl(octanoyl) transferase lipbA7J50_RS25655Not AvailableNegative5653378 - 565402523348.2
duf493 domain-containing proteinA7J50_RS25660Not AvailableNegative5654025 - 565430010254.3
d-alanyl-d-alanine carboxypeptidase family proteinA7J50_RS25665Not AvailableNegative5654386 - 565554342153.8
septal ring lytic transglycosylase rlpa family proteinA7J50_RS25670Not AvailableNegative5655722 - 565672335832.8
lytic murein transglycosylase bA7J50_RS25675Not AvailableNegative5656723 - 565773337712.8
rod shape-determining protein rodaA7J50_RS25680Not AvailableNegative5657751 - 565885440128.8

Displaying genes 5241 – 5250 of 6179 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.