Pseudomonas antarctica strain PAMC 27494

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas antarctica strain PAMC 27494 is characterized by having three replicons, which suggests a complex genomic structure that may contribute to its adaptability in various environments. The strain is associated with three specific accession numbers: NZ_CP015600.1, NZ_CP015601.1, and NZ_CP015602.1. These accession numbers indicate the presence of distinct genomic regions that could be involved in the strain's metabolic pathways and ecological functions. The presence of multiple replicons can enhance the organism's ability to acquire and maintain genetic material that may confer advantages in nutrient utilization, stress resistance, or other ecological interactions. This genomic feature is not uncommon among Pseudomonas species, which are known for their metabolic versatility and ability to thrive in diverse habitats, including extreme conditions. From an ecological perspective, Pseudomonas antarctica strain PAMC 27494 may play a significant role in biogeochemical cycles in its native environment, potentially aiding in nutrient cycling and decomposition processes. The strain's adaptability, as suggested by its genomic configuration, may allow it to occupy various ecological niches, contributing to microbial diversity and ecosystem functioning. Overall, the traits of Pseudomonas antarctica strain PAMC 27494 highlight its potential importance in environmental microbiology and biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas antarctica
Strainstrain PAMC 27494

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas antarctica strain PAMC 27494
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas antarctica strain PAMC 27494 chromosome, complete

Gene Summary

Adenine Count

1288199 bp

Thymine Count

1298267 bp

Guanine Count

1927737 bp

Cytosine Count

1927246 bp

Genome Length

6441449 bp

Protein-coding Genes

5627 genes

Non-Coding Genes

366 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphomannomutase/phosphoglucomutaseA7J50_RS12725Not AvailableNegative2773675 - 277400712528.8
type vi secretion system contractile sheath small subunitA7J50_RS12730Not AvailablePositive2774315 - 277481818843.5
type vi secretion system contractile sheath large subunitA7J50_RS12735Not AvailablePositive2774853 - 277639457350.9
type vi secretion system baseplate subunit tsskA7J50_RS12740Not AvailablePositive2776419 - 277777450349.6
type vi secretion system protein tssl, short formA7J50_RS12745Not AvailablePositive2777771 - 277845125003.0
ompa family proteinA7J50_RS12750Not AvailablePositive2778556 - 278018758748.4
hcp family type vi secretion system effectorA7J50_RS12755Not AvailablePositive2780203 - 278069418615.9
type vi secretion system atpase tsshA7J50_RS12760Not AvailablePositive2780838 - 278348697059.7
type vi secretion system vgr family proteinA7J50_RS12765Not AvailablePositive2783489 - 278586487355.7
hypothetical proteinA7J50_RS12770Not AvailablePositive2785896 - 278858099294.2

Displaying genes 2761 – 2770 of 6179 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.