Mycobacterium adipatum strain YC-RL4

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycobacterium

Description

Mycobacterium adipatum strain YC-RL4 is a Gram-positive, rod-shaped bacterium that thrives in petroleum-contaminated soils. This organism is equipped with flagella, which may contribute to its motility in such environments. The optimal growth temperature for M. adipatum strain YC-RL4 is 28°C, indicating a preference for moderate temperatures commonly found in various soil habitats. The strain possesses two replicons, which may play a role in its genomic stability and adaptability in the challenging conditions of petroleum contamination. The genetic information for this strain is accessible through the accession numbers NZ_CP015596.1 and NZ_CP015597.1, providing a resource for further exploration of its genomic features and metabolic capabilities. The ecological significance of Mycobacterium adipatum strain YC-RL4 lies in its potential role in bioremediation processes. As a bacterium capable of surviving in environments polluted by petroleum, it may contribute to the degradation of hydrocarbons, thereby aiding in the recovery of contaminated soils. Understanding the mechanisms through which this strain interacts with petroleum compounds could inform efforts to enhance bioremediation strategies, promoting the restoration of affected ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium adipatum
Strainstrain YC-RL4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Mycobacterium adipatum strain YC-RL4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature28
Temperature rangeNot Available
Habitatpetroleum-contaminated soil; petroleum-contaminated soils
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mycobacterium adipatum strain YC-RL4 plasmid pMYC1, complete

Gene Summary

Adenine Count

44186 bp

Thymine Count

42438 bp

Guanine Count

82443 bp

Cytosine Count

83501 bp

Genome Length

252568 bp

Protein-coding Genes

263 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyltransferase family 9 proteinA7U43_RS25650Not AvailablePositive5386785 - 538781037466.4
oligosaccharide flippase family proteinA7U43_RS25655Not AvailablePositive5388431 - 538965142328.7
o-antigen ligaseA7U43_RS25660Not AvailableNegative5389913 - 539128949006.9
class i sam-dependent methyltransferaseA7U43_RS25665Not AvailablePositive5392102 - 539294431372.2
glycosyltransferaseA7U43_RS30435Not AvailablePositive5393613 - 539408317598.0
glycosyltransferase family 4 proteinA7U43_RS29320Not AvailablePositive5394080 - 539520442420.7
glycosyltransferase family 9 proteinA7U43_RS25675Not AvailableNegative5395307 - 539645841277.9
fkbm family methyltransferaseA7U43_RS29890Not AvailableNegative5396579 - 539732828458.0
sugar transferaseA7U43_RS25685Not AvailableNegative5397403 - 539862645052.1
low molecular weight phosphatase family proteinA7U43_RS25690Not AvailablePositive5399762 - 540035221216.8

Displaying genes 5471 – 5480 of 5883 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.