Mycobacterium adipatum strain YC-RL4

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycobacterium

Description

Mycobacterium adipatum strain YC-RL4 is a Gram-positive, rod-shaped bacterium that thrives in petroleum-contaminated soils. This organism is equipped with flagella, which may contribute to its motility in such environments. The optimal growth temperature for M. adipatum strain YC-RL4 is 28°C, indicating a preference for moderate temperatures commonly found in various soil habitats. The strain possesses two replicons, which may play a role in its genomic stability and adaptability in the challenging conditions of petroleum contamination. The genetic information for this strain is accessible through the accession numbers NZ_CP015596.1 and NZ_CP015597.1, providing a resource for further exploration of its genomic features and metabolic capabilities. The ecological significance of Mycobacterium adipatum strain YC-RL4 lies in its potential role in bioremediation processes. As a bacterium capable of surviving in environments polluted by petroleum, it may contribute to the degradation of hydrocarbons, thereby aiding in the recovery of contaminated soils. Understanding the mechanisms through which this strain interacts with petroleum compounds could inform efforts to enhance bioremediation strategies, promoting the restoration of affected ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium adipatum
Strainstrain YC-RL4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Mycobacterium adipatum strain YC-RL4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature28
Temperature rangeNot Available
Habitatpetroleum-contaminated soil; petroleum-contaminated soils
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mycobacterium adipatum strain YC-RL4 plasmid pMYC1, complete

Gene Summary

Adenine Count

44186 bp

Thymine Count

42438 bp

Guanine Count

82443 bp

Cytosine Count

83501 bp

Genome Length

252568 bp

Protein-coding Genes

263 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
endonuclease domain-containing proteinA7U43_RS24410Not AvailablePositive5131592 - 513246432279.2
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolaseA7U43_RS24415Not AvailableNegative5132485 - 513404454087.9
phosphoribosylglycinamide formyltransferaseA7U43_RS24420Not AvailableNegative5134041 - 513467322180.7
duf6350 family proteinA7U43_RS24425Not AvailableNegative5134684 - 513607247226.8
duf5336 domain-containing proteinA7U43_RS24430Not AvailableNegative5136136 - 513700229186.2
dimethylsulfone monooxygenase sfngA7U43_RS24435Not AvailableNegative5137060 - 513819042435.7
llm class f420-dependent oxidoreductaseA7U43_RS24440Not AvailablePositive5138306 - 513915431015.7
dioxygenaseA7U43_RS24445Not AvailablePositive5139219 - 514007629251.0
acetyl-coa acetyltransferaseA7U43_RS24450Not AvailableNegative5140073 - 514160553999.6
s9 family peptidaseA7U43_RS24455Not AvailablePositive5141772 - 514364968958.8

Displaying genes 5221 – 5230 of 5883 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.