Mycobacterium adipatum strain YC-RL4

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycobacterium

Description

Mycobacterium adipatum strain YC-RL4 is a Gram-positive, rod-shaped bacterium that thrives in petroleum-contaminated soils. This organism is equipped with flagella, which may contribute to its motility in such environments. The optimal growth temperature for M. adipatum strain YC-RL4 is 28°C, indicating a preference for moderate temperatures commonly found in various soil habitats. The strain possesses two replicons, which may play a role in its genomic stability and adaptability in the challenging conditions of petroleum contamination. The genetic information for this strain is accessible through the accession numbers NZ_CP015596.1 and NZ_CP015597.1, providing a resource for further exploration of its genomic features and metabolic capabilities. The ecological significance of Mycobacterium adipatum strain YC-RL4 lies in its potential role in bioremediation processes. As a bacterium capable of surviving in environments polluted by petroleum, it may contribute to the degradation of hydrocarbons, thereby aiding in the recovery of contaminated soils. Understanding the mechanisms through which this strain interacts with petroleum compounds could inform efforts to enhance bioremediation strategies, promoting the restoration of affected ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium adipatum
Strainstrain YC-RL4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Mycobacterium adipatum strain YC-RL4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature28
Temperature rangeNot Available
Habitatpetroleum-contaminated soil; petroleum-contaminated soils
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mycobacterium adipatum strain YC-RL4 plasmid pMYC1, complete

Gene Summary

Adenine Count

44186 bp

Thymine Count

42438 bp

Guanine Count

82443 bp

Cytosine Count

83501 bp

Genome Length

252568 bp

Protein-coding Genes

263 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hnh endonuclease signature motif containing proteinA7U43_RS00580Not AvailableNegative118506 - 11961240479.4
is3 family transposaseA7U43_RS00585Not AvailableNegative119644 - 12089946396.5
abc transporter permeaseA7U43_RS28925Not AvailableNegative120953 - 1212049005.8
aromatic ring-hydroxylating dioxygenase subunit alphaA7U43_RS00595Not AvailableNegative121264 - 12243343709.9
tetr/acrr family transcriptional regulatorA7U43_RS00600Not AvailablePositive122497 - 12310822264.3
laci family dna-binding transcriptional regulatorA7U43_RS00605Not AvailablePositive123102 - 12410335359.3
l-rhamnose mutarotaseA7U43_RS00610Not AvailablePositive124208 - 12453412763.0
mfs transporterA7U43_RS00615Not AvailablePositive124568 - 12588446433.0
l-rhamnose isomeraseA7U43_RS00620Not AvailablePositive125892 - 12704041642.2
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenaseA7U43_RS00625Not AvailablePositive127042 - 12908771589.8

Displaying genes 381 – 390 of 5883 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.