Mycobacterium adipatum strain YC-RL4

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycobacterium

Description

Mycobacterium adipatum strain YC-RL4 is a Gram-positive, rod-shaped bacterium that thrives in petroleum-contaminated soils. This organism is equipped with flagella, which may contribute to its motility in such environments. The optimal growth temperature for M. adipatum strain YC-RL4 is 28°C, indicating a preference for moderate temperatures commonly found in various soil habitats. The strain possesses two replicons, which may play a role in its genomic stability and adaptability in the challenging conditions of petroleum contamination. The genetic information for this strain is accessible through the accession numbers NZ_CP015596.1 and NZ_CP015597.1, providing a resource for further exploration of its genomic features and metabolic capabilities. The ecological significance of Mycobacterium adipatum strain YC-RL4 lies in its potential role in bioremediation processes. As a bacterium capable of surviving in environments polluted by petroleum, it may contribute to the degradation of hydrocarbons, thereby aiding in the recovery of contaminated soils. Understanding the mechanisms through which this strain interacts with petroleum compounds could inform efforts to enhance bioremediation strategies, promoting the restoration of affected ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium adipatum
Strainstrain YC-RL4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Mycobacterium adipatum strain YC-RL4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature28
Temperature rangeNot Available
Habitatpetroleum-contaminated soil; petroleum-contaminated soils
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mycobacterium adipatum strain YC-RL4 plasmid pMYC1, complete

Gene Summary

Adenine Count

44186 bp

Thymine Count

42438 bp

Guanine Count

82443 bp

Cytosine Count

83501 bp

Genome Length

252568 bp

Protein-coding Genes

263 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-oxoglutarate dehydrogenase, e2 component, dihydrolipoamide succinyltransferaseA7U43_RS13505Not AvailableNegative2845741 - 284749260115.3
oxidoreductaseA7U43_RS13510Not AvailablePositive2847637 - 284799313633.1
sdr family oxidoreductaseA7U43_RS13515Not AvailablePositive2847996 - 284976262910.8
leucyl aminopeptidaseA7U43_RS13520Not AvailableNegative2849759 - 285127351517.6
adenylate/guanylate cyclase domain-containing proteinA7U43_RS13525Not AvailableNegative2851284 - 285236637661.2
glycine cleavage system aminomethyltransferase gcvtA7U43_RS13530Not AvailablePositive2852411 - 285350838329.7
branched-chain amino acid aminotransferaseA7U43_RS13535Not AvailablePositive2853532 - 285463839860.1
ydiu family proteinA7U43_RS13540Not AvailableNegative2854790 - 285619049778.1
adenosylcobinamide-gdp ribazoletransferaseA7U43_RS13545Not AvailableNegative2856201 - 285692323439.2
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseA7U43_RS13550Not AvailableNegative2856934 - 285798034914.8

Displaying genes 3011 – 3020 of 5883 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.