Mycobacterium adipatum strain YC-RL4

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycobacterium

Description

Mycobacterium adipatum strain YC-RL4 is a Gram-positive, rod-shaped bacterium that thrives in petroleum-contaminated soils. This organism is equipped with flagella, which may contribute to its motility in such environments. The optimal growth temperature for M. adipatum strain YC-RL4 is 28°C, indicating a preference for moderate temperatures commonly found in various soil habitats. The strain possesses two replicons, which may play a role in its genomic stability and adaptability in the challenging conditions of petroleum contamination. The genetic information for this strain is accessible through the accession numbers NZ_CP015596.1 and NZ_CP015597.1, providing a resource for further exploration of its genomic features and metabolic capabilities. The ecological significance of Mycobacterium adipatum strain YC-RL4 lies in its potential role in bioremediation processes. As a bacterium capable of surviving in environments polluted by petroleum, it may contribute to the degradation of hydrocarbons, thereby aiding in the recovery of contaminated soils. Understanding the mechanisms through which this strain interacts with petroleum compounds could inform efforts to enhance bioremediation strategies, promoting the restoration of affected ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium adipatum
Strainstrain YC-RL4

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Mycobacterium adipatum strain YC-RL4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature28
Temperature rangeNot Available
Habitatpetroleum-contaminated soil; petroleum-contaminated soils
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mycobacterium adipatum strain YC-RL4 plasmid pMYC1, complete

Gene Summary

Adenine Count

44186 bp

Thymine Count

42438 bp

Guanine Count

82443 bp

Cytosine Count

83501 bp

Genome Length

252568 bp

Protein-coding Genes

263 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fad-dependent urate hydroxylase hpxoA7U43_RS06800Not AvailableNegative1451355 - 145252141739.7
hydroxyisourate hydrolaseA7U43_RS06805Not AvailableNegative1452524 - 145284110908.9
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylaseA7U43_RS06810Not AvailableNegative1452850 - 145329616460.4
solute carrier family 23 proteinA7U43_RS06815Not AvailableNegative1453344 - 145524566961.0
alanine racemaseA7U43_RS06820Not AvailableNegative1455317 - 145639638556.7
ndma-dependent alcohol dehydrogenaseA7U43_RS06825Not AvailableNegative1456405 - 145751739021.9
hypothetical proteinA7U43_RS06830Not AvailableNegative1457598 - 145833225108.2
satd family proteinA7U43_RS06835Not AvailableNegative1458329 - 145895222139.3
(3as,4s,5r, 7as)-5-hydroxy-7a-methyl-1-oxo-octahydro-1h-indene-4- carboxyl-coa dehydrogenaseA7U43_RS06840Not AvailableNegative1458999 - 146007236404.4
cholesterol ring-cleaving hydrolase subunit ipdbA7U43_RS06845Not AvailableNegative1460076 - 146083127524.8

Displaying genes 1661 – 1670 of 5883 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.