Paenibacillus polymyxa strain J

Gram-positiveRodMotileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus polymyxa strain J is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic growth, allowing it to thrive in various oxygen conditions. This strain is a chemoheterotroph, deriving energy from organic compounds. It is motile, possessing flagella that facilitate movement, and it has a mesophilic temperature range, with an optimal growth temperature of 37°C. This bacterium is free-living and can be found in multiple habitats, indicating its adaptability to diverse environmental conditions. Notably, Paenibacillus polymyxa strain J has been associated with several hosts, including Gallus gallus (chickens), various plant species such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), Zea mays subsp. mays (maize), Arachis hypogaea (peanut), and Arabidopsis thaliana. This wide host range suggests that it may play a significant role in plant and animal interactions, particularly in agricultural contexts. Additionally, the strain is capable of sporulation, which may enhance its survival in adverse environments by allowing it to enter a dormant state. The presence of a single replicon in its genetic makeup further characterizes its genomic organization. Collectively, these traits indicate that Paenibacillus polymyxa strain J could be a valuable organism in biotechnological applications, such as promoting plant growth or enhancing soil health, due to its beneficial relationships with various hosts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus polymyxa
Strainstrain J

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Paenibacillus polymyxa strain J
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Gallus gallus, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Paenibacillus polymyxa strain J


Gene Summary

Adenine Count

1562140 bp

Thymine Count

1561860 bp

Guanine Count

1313754 bp

Cytosine Count

1319184 bp

Genome Length

5756938 bp

Protein-coding Genes

5006 genes

Non-Coding Genes

240 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AntirepressorAOU00_RS25565Not AvailableNegative250131 - 25084427234.5
tyrosinase family proteinAOU00_RS01175Not AvailablePositive251292 - 25238340760.9
AntirepressorAOU00_RS01180Not AvailableNegative253144 - 25378824670.1
Cro-like transcriptional regulatorAOU00_RS01185Not AvailableNegative253987 - 2541937836.58
Putative spbeta phage repressorAOU00_RS01190Not AvailablePositive254292 - 25485821693.9
Hypothetical proteinAOU00_RS01195Not AvailableNegative255075 - 25567121883.1
Putative minor structural proteinAOU00_RS01200Not AvailableNegative255736 - 25785077898.2
phage distal tail proteinAOU00_RS01205Not AvailableNegative257895 - 25853323554.3
right-handed parallel beta-helix repeat-containing proteinAOU00_RS01210Not AvailableNegative258550 - 25991748995.1
Major capsid proteinAOU00_RS01215Not AvailableNegative259927 - 26033714407.1

Displaying genes 1 – 10 of 5246 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

385 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 385 metabolites

Health Effects

No health effects information available for this bacterium.